Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY94_RS04210 Genome accession   NZ_CP089485
Coordinates   835812..836585 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 830812..841585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS04175 - 831065..831835 (-) 771 WP_000473705.1 isoprenyl transferase -
  LUY94_RS04180 frr 832208..832762 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUY94_RS04185 pyrH 832781..833503 (-) 723 WP_000057330.1 UMP kinase -
  LUY94_RS04190 tsf 833640..834521 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUY94_RS04195 - 834556..834669 (-) 114 WP_001789890.1 hypothetical protein -
  LUY94_RS04200 rpsB 834703..835470 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY94_RS04205 - 835669..835761 (-) 93 WP_001790530.1 hypothetical protein -
  LUY94_RS04210 codY 835812..836585 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY94_RS04215 hslU 836610..838013 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY94_RS04220 hslV 838079..838624 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY94_RS04225 xerC 838621..839517 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUY94_RS04230 trmFO 839934..841241 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550780 LUY94_RS04210 WP_000055337.1 835812..836585(-) (codY) [Staphylococcus aureus strain E1139_IV_ST45]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550780 LUY94_RS04210 WP_000055337.1 835812..836585(-) (codY) [Staphylococcus aureus strain E1139_IV_ST45]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428