Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J5X95_RS17360 Genome accession   NZ_CP072120
Coordinates   3435041..3435820 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3430041..3440820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS17340 (J5X95_17340) trmFO 3430728..3432035 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J5X95_RS17345 (J5X95_17345) xerC 3432105..3433022 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  J5X95_RS17350 (J5X95_17350) hslV 3433038..3433583 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J5X95_RS17355 (J5X95_17355) hslU 3433600..3435003 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  J5X95_RS17360 (J5X95_17360) codY 3435041..3435820 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J5X95_RS17365 (J5X95_17365) flgB 3436174..3436563 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J5X95_RS17370 (J5X95_17370) flgC 3436563..3437015 (+) 453 WP_020955818.1 flagellar basal body rod protein FlgC -
  J5X95_RS17375 (J5X95_17375) fliE 3437026..3437346 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J5X95_RS17380 (J5X95_17380) fliF 3437389..3438999 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  J5X95_RS17385 (J5X95_17385) fliG 3439012..3440028 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J5X95_RS17390 (J5X95_17390) fliH 3440021..3440776 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=550746 J5X95_RS17360 WP_003154263.1 3435041..3435820(+) (codY) [Bacillus amyloliquefaciens strain GKT04]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=550746 J5X95_RS17360 WP_003154263.1 3435041..3435820(+) (codY) [Bacillus amyloliquefaciens strain GKT04]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471