Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY97_RS04550 Genome accession   NZ_CP089483
Coordinates   882925..883698 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 0104_III_ST239     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 877925..888698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY97_RS04515 - 878178..878948 (-) 771 WP_000473705.1 isoprenyl transferase -
  LUY97_RS04520 frr 879321..879875 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUY97_RS04525 pyrH 879894..880616 (-) 723 WP_000057330.1 UMP kinase -
  LUY97_RS04530 tsf 880753..881634 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUY97_RS04535 - 881669..881782 (-) 114 WP_001789890.1 hypothetical protein -
  LUY97_RS04540 rpsB 881816..882583 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY97_RS04545 - 882782..882874 (-) 93 WP_001790530.1 hypothetical protein -
  LUY97_RS04550 codY 882925..883698 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY97_RS04555 hslU 883723..885126 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY97_RS04560 hslV 885192..885737 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY97_RS04565 xerC 885734..886630 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUY97_RS04570 trmFO 887047..888354 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550694 LUY97_RS04550 WP_000055337.1 882925..883698(-) (codY) [Staphylococcus aureus strain 0104_III_ST239]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550694 LUY97_RS04550 WP_000055337.1 882925..883698(-) (codY) [Staphylococcus aureus strain 0104_III_ST239]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428