Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   J5M87_RS06895 Genome accession   NZ_CP072115
Coordinates   1447848..1448678 (-) Length   276 a.a.
NCBI ID   WP_154608451.1    Uniprot ID   A0A6I4RJ44
Organism   Streptococcus zhangguiae strain zg-86     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1442848..1453678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5M87_RS06880 (J5M87_06880) - 1444523..1445551 (-) 1029 WP_154608448.1 sugar kinase -
  J5M87_RS06885 (J5M87_06885) - 1445618..1447162 (-) 1545 WP_154608449.1 MFS transporter -
  J5M87_RS06890 (J5M87_06890) - 1447378..1447839 (-) 462 WP_154608450.1 GNAT family N-acetyltransferase -
  J5M87_RS06895 (J5M87_06895) endA 1447848..1448678 (-) 831 WP_154608451.1 DNA/RNA non-specific endonuclease Machinery gene
  J5M87_RS06900 (J5M87_06900) - 1448815..1449009 (-) 195 WP_154608452.1 DNA-directed RNA polymerase subunit beta -
  J5M87_RS06905 (J5M87_06905) murA 1449010..1450284 (-) 1275 WP_154608453.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  J5M87_RS06910 (J5M87_06910) - 1450358..1450588 (-) 231 WP_154608454.1 DUF1146 family protein -
  J5M87_RS06915 (J5M87_06915) - 1450962..1451378 (-) 417 WP_154608455.1 F0F1 ATP synthase subunit epsilon -
  J5M87_RS06920 (J5M87_06920) atpD 1451388..1452794 (-) 1407 WP_154608456.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30397.08 Da        Isoelectric Point: 9.7651

>NTDB_id=550543 J5M87_RS06895 WP_154608451.1 1447848..1448678(-) (endA) [Streptococcus zhangguiae strain zg-86]
MARKKTKKQSMSLASLVITLLLVAGGYFWAEEPSTVSHRPVTRVETATSRPSEELARSVLTDTVRVQLGADLVYNGAGAF
IVNGNQTDLDASVASAPYADNRTKTAQGKLVPTVANALLSKATRQYQKREETGNGPTNWKPAGWHQVRHLEGEYNHAIDR
GHLLAYSLVGGLKGYDASTSNPKNIAVQTAWSNQSNRPDATGQNYFETQIRRALDQNKRVRYRVTLIYQSQEDLVPVGSH
LEAKAADGSLEFNVFVPNVQQGLIIDYYSGKIHLNQ

Nucleotide


Download         Length: 831 bp        

>NTDB_id=550543 J5M87_RS06895 WP_154608451.1 1447848..1448678(-) (endA) [Streptococcus zhangguiae strain zg-86]
ATGGCAAGGAAAAAAACAAAAAAACAGAGTATGAGTCTAGCTAGCCTAGTGATCACACTCTTACTGGTGGCTGGTGGTTA
TTTTTGGGCAGAAGAACCTTCGACCGTATCTCATCGACCAGTTACTAGAGTAGAAACCGCTACATCTAGGCCTTCAGAAG
AGCTAGCACGTTCCGTTTTGACGGATACAGTACGGGTCCAGTTGGGAGCTGACCTTGTCTACAACGGAGCAGGTGCTTTC
ATTGTCAATGGCAATCAAACTGATTTGGACGCCTCTGTAGCGAGCGCTCCTTATGCAGATAATCGAACTAAGACTGCGCA
GGGGAAACTGGTACCAACTGTCGCAAATGCTCTTTTAAGTAAGGCAACCCGTCAGTATCAAAAGCGTGAAGAAACTGGAA
ATGGTCCAACCAATTGGAAGCCAGCTGGTTGGCACCAAGTAAGGCATTTAGAAGGGGAATACAACCATGCCATTGATAGA
GGGCACTTATTAGCTTATTCCTTAGTTGGTGGGTTAAAAGGGTACGATGCTTCAACCAGTAACCCTAAAAATATAGCCGT
CCAGACTGCGTGGTCCAACCAATCCAATCGCCCAGATGCGACAGGTCAAAATTATTTTGAAACACAGATACGTAGAGCCT
TAGATCAAAATAAACGGGTACGGTATCGAGTGACATTGATCTATCAATCGCAGGAAGATTTAGTGCCAGTAGGAAGTCAT
TTGGAAGCGAAAGCAGCAGACGGCAGTCTGGAGTTTAATGTTTTTGTCCCAAATGTCCAGCAAGGTTTAATTATTGATTA
TTACAGTGGGAAGATTCATCTTAACCAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(78-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4RJ44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

61.961

92.391

0.572
  endA Streptococcus pneumoniae D39

61.961

92.391

0.572
  endA Streptococcus pneumoniae R6

61.961

92.391

0.572
  endA Streptococcus pneumoniae TIGR4

61.961

92.391

0.572