Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY99_RS00790 Genome accession   NZ_CP089479
Coordinates   160460..161233 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 0073_III_ST239     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 155460..166233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY99_RS00770 trmFO 155804..157111 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LUY99_RS00775 xerC 157528..158424 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUY99_RS00780 hslV 158421..158966 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY99_RS00785 hslU 159032..160435 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY99_RS00790 codY 160460..161233 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY99_RS00795 - 161284..161376 (+) 93 WP_001790530.1 hypothetical protein -
  LUY99_RS00800 rpsB 161575..162342 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY99_RS00805 - 162376..162489 (+) 114 WP_001789890.1 hypothetical protein -
  LUY99_RS00810 tsf 162524..163405 (+) 882 WP_000201387.1 translation elongation factor Ts -
  LUY99_RS00815 pyrH 163542..164264 (+) 723 WP_000057330.1 UMP kinase -
  LUY99_RS00820 frr 164283..164837 (+) 555 WP_001280006.1 ribosome recycling factor -
  LUY99_RS00825 - 165210..165980 (+) 771 WP_000473701.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550484 LUY99_RS00790 WP_000055337.1 160460..161233(+) (codY) [Staphylococcus aureus strain 0073_III_ST239]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550484 LUY99_RS00790 WP_000055337.1 160460..161233(+) (codY) [Staphylococcus aureus strain 0073_III_ST239]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428