Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUZ07_RS03990 Genome accession   NZ_CP089476
Coordinates   795010..795783 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 3596_II_ST8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 790010..800783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ07_RS03955 - 790263..791033 (-) 771 WP_000473701.1 isoprenyl transferase -
  LUZ07_RS03960 frr 791406..791960 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUZ07_RS03965 pyrH 791979..792701 (-) 723 WP_000057330.1 UMP kinase -
  LUZ07_RS03970 tsf 792838..793719 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUZ07_RS03975 - 793754..793867 (-) 114 WP_001789890.1 hypothetical protein -
  LUZ07_RS03980 rpsB 793901..794668 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUZ07_RS03985 - 794867..794959 (-) 93 WP_001790530.1 hypothetical protein -
  LUZ07_RS03990 codY 795010..795783 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUZ07_RS03995 hslU 795808..797211 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUZ07_RS04000 hslV 797277..797822 (-) 546 WP_000072684.1 ATP-dependent protease subunit HslV -
  LUZ07_RS04005 xerC 797819..798715 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUZ07_RS04010 trmFO 799132..800439 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550342 LUZ07_RS03990 WP_000055337.1 795010..795783(-) (codY) [Staphylococcus aureus strain 3596_II_ST8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550342 LUZ07_RS03990 WP_000055337.1 795010..795783(-) (codY) [Staphylococcus aureus strain 3596_II_ST8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428