Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J5V93_RS08355 Genome accession   NZ_CP072061
Coordinates   1652386..1652673 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain JAS06/1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647386..1657673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS08335 (J5V93_08335) - 1648576..1648763 (+) 188 Protein_1633 DUF4083 domain-containing protein -
  J5V93_RS08340 (J5V93_08340) - 1648791..1649252 (+) 462 WP_002130989.1 NUDIX hydrolase -
  J5V93_RS08345 (J5V93_08345) nadE 1649297..1650115 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  J5V93_RS08350 (J5V93_08350) - 1650386..1652266 (+) 1881 WP_002012400.1 ABC transporter permease -
  J5V93_RS08355 (J5V93_08355) abrB 1652386..1652673 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J5V93_RS08360 (J5V93_08360) - 1653008..1653958 (+) 951 WP_002012402.1 serine protease -
  J5V93_RS08365 (J5V93_08365) - 1654057..1654143 (+) 87 Protein_1639 IS6 family transposase -
  J5V93_RS08370 (J5V93_08370) ugpC 1654173..1655276 (-) 1104 WP_078422293.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  J5V93_RS08375 (J5V93_08375) - 1655680..1656543 (-) 864 WP_078422292.1 helix-turn-helix domain-containing protein -
  J5V93_RS08380 (J5V93_08380) - 1656613..1657473 (-) 861 WP_078422291.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=550327 J5V93_RS08355 WP_002012401.1 1652386..1652673(+) (abrB) [Bacillus mycoides strain JAS06/1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=550327 J5V93_RS08355 WP_002012401.1 1652386..1652673(+) (abrB) [Bacillus mycoides strain JAS06/1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGTATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558