Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   J5V73_RS21700 Genome accession   NZ_CP072057
Coordinates   4227818..4230154 (-) Length   778 a.a.
NCBI ID   WP_088293724.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4222818..4235154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V73_RS21675 (J5V73_21670) - 4225479..4225823 (+) 345 WP_002129215.1 PH domain-containing protein -
  J5V73_RS21680 (J5V73_21675) - 4225862..4226929 (-) 1068 WP_002129216.1 AI-2E family transporter -
  J5V73_RS21685 (J5V73_21680) - 4227106..4227318 (+) 213 WP_002015285.1 hypothetical protein -
  J5V73_RS21690 (J5V73_21685) - 4227355..4227483 (-) 129 WP_002015286.1 YrzQ family protein -
  J5V73_RS21695 (J5V73_21690) - 4227502..4227690 (-) 189 WP_002015288.1 hypothetical protein -
  J5V73_RS21700 (J5V73_21695) recD2 4227818..4230154 (-) 2337 WP_088293724.1 ATP-dependent RecD-like DNA helicase Machinery gene
  J5V73_RS21705 (J5V73_21700) - 4230262..4230921 (-) 660 WP_002088750.1 tetratricopeptide repeat protein -
  J5V73_RS21710 (J5V73_21705) mnmA 4231032..4232147 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  J5V73_RS21715 (J5V73_21710) - 4232164..4233309 (-) 1146 WP_061689583.1 cysteine desulfurase family protein -
  J5V73_RS21720 (J5V73_21715) cymR 4233345..4233761 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87222.86 Da        Isoelectric Point: 5.2043

>NTDB_id=550296 J5V73_RS21700 WP_088293724.1 4227818..4230154(-) (recD2) [Bacillus mycoides strain JAS12/5]
MGNQHAMDLFEEEKRFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGGVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=550296 J5V73_RS21700 WP_088293724.1 4227818..4230154(-) (recD2) [Bacillus mycoides strain JAS12/5]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAGATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGATGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCGG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGTGTGT
ATTTAGCTTCGTTATTTTACTCTGAAAAAGGCGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAGGAAACCCCTGCA
TTTCCTGAAGCAGAAGTGTTAAAGACATTAGGTGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACTACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCGCTTCACGGGCTATCACTAAATCTAAATGAGTATAGTGATGACAATCCATTTCCAATA
CTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGACTTCCAGCTTGCACAATTCATCGCCT
GCTTGGATGGACGCCAGAAGGGTCTTTCCAGCGAAATGAAACAGACCCTGTTCAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTGGCAAATCAATTGTTTAAATCCTTGCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTGTTGGCACCAATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGGAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTCCCAATAGTTA
TTATGCCAATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577