Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LT922_RS22625 Genome accession   NZ_CP089445
Coordinates   4604009..4604773 (+) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain 5-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4599009..4609773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT922_RS22605 (LT922_22605) acpT 4599963..4600550 (+) 588 WP_000285760.1 4'-phosphopantetheinyl transferase AcpT -
  LT922_RS22610 (LT922_22610) nikA 4600661..4602235 (+) 1575 WP_000493124.1 nickel ABC transporter substrate-binding protein -
  LT922_RS22615 (LT922_22615) nikB 4602235..4603179 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  LT922_RS22620 (LT922_22620) nikC 4603176..4604009 (+) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  LT922_RS22625 (LT922_22625) amiE 4604009..4604773 (+) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  LT922_RS22630 (LT922_22630) nikE 4604770..4605576 (+) 807 WP_000173684.1 nickel import ATP-binding protein NikE -
  LT922_RS22635 (LT922_22635) nikR 4605582..4605983 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  LT922_RS22640 (LT922_22640) - 4606182..4606928 (+) 747 WP_001296489.1 GntR family transcriptional regulator -
  LT922_RS22645 (LT922_22645) - 4606953..4607426 (+) 474 WP_001161648.1 PTS sugar transporter subunit IIA -
  LT922_RS22650 (LT922_22650) - 4607423..4607704 (+) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  LT922_RS22655 (LT922_22655) - 4607781..4609139 (+) 1359 WP_001525857.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=550198 LT922_RS22625 WP_001136232.1 4604009..4604773(+) (amiE) [Escherichia coli strain 5-1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=550198 LT922_RS22625 WP_001136232.1 4604009..4604773(+) (amiE) [Escherichia coli strain 5-1]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTAGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCGCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398