Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LUA78_RS06895 Genome accession   NZ_CP089283
Coordinates   1453981..1455156 (-) Length   391 a.a.
NCBI ID   WP_046655653.1    Uniprot ID   -
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448981..1460156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS06860 (LUA78_06860) - 1449306..1449620 (+) 315 WP_001265943.1 hypothetical protein -
  LUA78_RS06865 (LUA78_06865) - 1449598..1450365 (+) 768 WP_000602348.1 RNA polymerase sigma factor FliA -
  LUA78_RS06870 (LUA78_06870) fliM 1450358..1451422 (+) 1065 WP_000763588.1 flagellar motor switch protein FliM -
  LUA78_RS06875 (LUA78_06875) fliY 1451426..1452283 (+) 858 WP_001150654.1 flagellar motor switch protein FliY -
  LUA78_RS06880 (LUA78_06880) - 1452313..1452849 (+) 537 WP_000963980.1 YhcH/YjgK/YiaL family protein -
  LUA78_RS06885 (LUA78_06885) - 1452846..1453349 (+) 504 WP_000780234.1 DUF2147 domain-containing protein -
  LUA78_RS06890 (LUA78_06890) fur 1453369..1453821 (-) 453 WP_001253271.1 ferric iron uptake transcriptional regulator -
  LUA78_RS06895 (LUA78_06895) rarA 1453981..1455156 (-) 1176 WP_046655653.1 replication-associated recombination protein A Machinery gene
  LUA78_RS06900 (LUA78_06900) - 1455153..1455524 (-) 372 WP_000272467.1 heat shock protein transcriptional repressor HspR -
  LUA78_RS06905 (LUA78_06905) - 1455534..1456400 (-) 867 WP_046655648.1 DnaJ family protein -
  LUA78_RS06910 (LUA78_06910) - 1456568..1457818 (+) 1251 WP_001199520.1 hypothetical protein -
  LUA78_RS06915 (LUA78_06915) - 1458062..1458928 (-) 867 WP_234618162.1 5'-3' exonuclease -
  LUA78_RS06920 (LUA78_06920) - 1459149..1460045 (-) 897 WP_046655642.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43909.61 Da        Isoelectric Point: 9.0864

>NTDB_id=550053 LUA78_RS06895 WP_046655653.1 1453981..1455156(-) (rarA) [Helicobacter pylori strain J99 derivative isolate D1]
MSLTVLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNRALILGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDRLCDK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYNDDTHYNLTSALIKSLRGSD
ENASMYYLTRLVAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=550053 LUA78_RS06895 WP_046655653.1 1453981..1455156(-) (rarA) [Helicobacter pylori strain J99 derivative isolate D1]
ATGAGCCTGACTGTGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCTATTATGGAAAAAAATCGCGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCAATCCGCTCAAGAAGTTTTACTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAACGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATGTATTATCTGACGCGCTTGGTTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCACCTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-119)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.019

100

0.394