Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5D20_RS00090 Genome accession   NZ_CP071984
Coordinates   13849..14130 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8849..19130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS00070 (J5D20_00070) groES 9415..9771 (-) 357 WP_000671927.1 co-chaperone GroES -
  J5D20_RS00075 (J5D20_00075) dnaG 10058..11737 (+) 1680 WP_209525907.1 DNA primase -
  J5D20_RS00080 (J5D20_00080) - 11734..12786 (+) 1053 WP_209525909.1 MnmA/TRMU family protein -
  J5D20_RS00085 (J5D20_00085) - 12876..13703 (+) 828 WP_097708223.1 DUF5718 family protein -
  J5D20_RS00090 (J5D20_00090) comB2 13849..14130 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  J5D20_RS00095 (J5D20_00095) comB3 14130..14393 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  J5D20_RS00100 (J5D20_00100) comB4 14395..16758 (+) 2364 WP_097708222.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D20_RS00110 (J5D20_00110) - 17063..18403 (+) 1341 WP_198994763.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=549683 J5D20_RS00090 WP_001272690.1 13849..14130(+) (comB2) [Helicobacter pylori strain MT5114]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=549683 J5D20_RS00090 WP_001272690.1 13849..14130(+) (comB2) [Helicobacter pylori strain MT5114]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATTGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1