Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5D22_RS04915 Genome accession   NZ_CP071977
Coordinates   1062623..1062907 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori strain MT5105     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057623..1067907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS04895 (J5D22_04895) - 1058258..1059394 (-) 1137 WP_209505416.1 VirB8/TrbF family protein -
  J5D22_RS07940 - 1059387..1059527 (-) 141 WP_000789929.1 hypothetical protein -
  J5D22_RS04900 (J5D22_04900) - 1059524..1062100 (-) 2577 WP_209505418.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  J5D22_RS04905 (J5D22_04905) - 1062100..1062336 (-) 237 WP_001168532.1 hypothetical protein -
  J5D22_RS04910 (J5D22_04910) comB3 1062348..1062611 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  J5D22_RS04915 (J5D22_04915) comB2 1062623..1062907 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  J5D22_RS04920 (J5D22_04920) - 1062895..1063383 (-) 489 WP_209505420.1 hypothetical protein -
  J5D22_RS04925 (J5D22_04925) - 1063376..1063606 (-) 231 WP_000189082.1 hypothetical protein -
  J5D22_RS04930 (J5D22_04930) - 1063609..1064397 (-) 789 WP_001140576.1 hypothetical protein -
  J5D22_RS07945 - 1064473..1065545 (+) 1073 Protein_986 type IV secretion system protein -
  J5D22_RS04945 (J5D22_04945) - 1065617..1066300 (+) 684 WP_209505422.1 CAAX protease -
  J5D22_RS04950 (J5D22_04950) - 1066372..1067453 (-) 1082 Protein_988 site-specific integrase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=549613 J5D22_RS04915 WP_000413637.1 1062623..1062907(-) (comB2) [Helicobacter pylori strain MT5105]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=549613 J5D22_RS04915 WP_000413637.1 1062623..1062907(-) (comB2) [Helicobacter pylori strain MT5105]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553