Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5D22_RS00095 Genome accession   NZ_CP071977
Coordinates   14118..14381 (+) Length   87 a.a.
NCBI ID   WP_000584948.1    Uniprot ID   A0AB72ZTB6
Organism   Helicobacter pylori strain MT5105     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9118..19381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS00070 (J5D22_00070) groES 9411..9767 (-) 357 WP_000671927.1 co-chaperone GroES -
  J5D22_RS00075 (J5D22_00075) dnaG 10044..11723 (+) 1680 WP_209505920.1 DNA primase -
  J5D22_RS00080 (J5D22_00080) - 11720..12772 (+) 1053 WP_209505922.1 MnmA/TRMU family protein -
  J5D22_RS00085 (J5D22_00085) - 12865..13692 (+) 828 WP_209505924.1 DUF5718 family protein -
  J5D22_RS00090 (J5D22_00090) - 13838..14118 (+) 281 Protein_12 TrbC/VirB2 family protein -
  J5D22_RS00095 (J5D22_00095) comB3 14118..14381 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  J5D22_RS00100 (J5D22_00100) comB4 14383..16746 (+) 2364 WP_021186681.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D22_RS00110 (J5D22_00110) - 17051..18391 (+) 1341 WP_209506529.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9992.05 Da        Isoelectric Point: 9.5290

>NTDB_id=549598 J5D22_RS00095 WP_000584948.1 14118..14381(+) (comB3) [Helicobacter pylori strain MT5105]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=549598 J5D22_RS00095 WP_000584948.1 14118..14381(+) (comB3) [Helicobacter pylori strain MT5105]
ATGATTATCTTATCAGCGAGCGTGAAGAATTTGCGTGAGATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCCAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCGGATATTATTATCGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977