Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J4T92_RS00090 Genome accession   NZ_CP071975
Coordinates   13498..13779 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8498..18779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS00070 (J4T92_00070) groES 9070..9426 (-) 357 WP_165518556.1 co-chaperone GroES -
  J4T92_RS00075 (J4T92_00075) dnaG 9706..11385 (+) 1680 WP_209552996.1 DNA primase -
  J4T92_RS00080 (J4T92_00080) - 11382..12434 (+) 1053 WP_209552997.1 MnmA/TRMU family protein -
  J4T92_RS00085 (J4T92_00085) - 12526..13353 (+) 828 WP_024368731.1 DUF5718 family protein -
  J4T92_RS00090 (J4T92_00090) comB2 13498..13779 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  J4T92_RS00095 (J4T92_00095) comB3 13779..14042 (+) 264 WP_000584968.1 hypothetical protein Machinery gene
  J4T92_RS00100 (J4T92_00100) comB4 14044..16407 (+) 2364 WP_209552998.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J4T92_RS00110 (J4T92_00110) - 16707..18047 (+) 1341 WP_209552999.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=549575 J4T92_RS00090 WP_001272690.1 13498..13779(+) (comB2) [Helicobacter pylori strain MT5118]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=549575 J4T92_RS00090 WP_001272690.1 13498..13779(+) (comB2) [Helicobacter pylori strain MT5118]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1