Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J4048_RS08215 Genome accession   NZ_CP071970
Coordinates   1655052..1655831 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650052..1660831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS08195 (J4048_08195) trmFO 1650739..1652046 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J4048_RS08200 (J4048_08200) xerC 1652116..1653033 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  J4048_RS08205 (J4048_08205) hslV 1653049..1653594 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J4048_RS08210 (J4048_08210) hslU 1653602..1655014 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  J4048_RS08215 (J4048_08215) codY 1655052..1655831 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J4048_RS08220 (J4048_08220) flgB 1656185..1656574 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J4048_RS08225 (J4048_08225) flgC 1656574..1657026 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  J4048_RS08230 (J4048_08230) fliE 1657037..1657357 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J4048_RS08235 (J4048_08235) fliF 1657400..1659010 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  J4048_RS08240 (J4048_08240) fliG 1659023..1660039 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J4048_RS08245 (J4048_08245) fliH 1660032..1660787 (+) 756 WP_015417466.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=549489 J4048_RS08215 WP_003154263.1 1655052..1655831(+) (codY) [Bacillus amyloliquefaciens strain XJ5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=549489 J4048_RS08215 WP_003154263.1 1655052..1655831(+) (codY) [Bacillus amyloliquefaciens strain XJ5]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471