Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4771_RS12490 Genome accession   NZ_CP071953
Coordinates   2673070..2673687 (-) Length   205 a.a.
NCBI ID   WP_262900175.1    Uniprot ID   -
Organism   Candidatus Kaistella beijingensis strain PM-38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668070..2678687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4771_RS12465 (J4771_12430) - 2668226..2668633 (+) 408 WP_224135316.1 thiol-disulfide oxidoreductase DCC family protein -
  J4771_RS12470 (J4771_12435) - 2668794..2669435 (+) 642 WP_224135317.1 DUF4290 domain-containing protein -
  J4771_RS12475 (J4771_12440) murA 2669438..2670745 (+) 1308 WP_224135318.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  J4771_RS12480 (J4771_12445) der 2670942..2672249 (+) 1308 WP_224135319.1 ribosome biogenesis GTPase Der -
  J4771_RS12485 (J4771_12450) upp 2672358..2673008 (+) 651 WP_224135320.1 uracil phosphoribosyltransferase -
  J4771_RS12490 (J4771_12455) comF 2673070..2673687 (-) 618 WP_262900175.1 ComF family protein Machinery gene
  J4771_RS12495 (J4771_12460) - 2673768..2675237 (-) 1470 WP_224135322.1 helix-turn-helix domain-containing protein -
  J4771_RS12500 (J4771_12465) aceB 2675363..2676940 (+) 1578 WP_224135323.1 malate synthase A -
  J4771_RS12505 (J4771_12470) aceA 2677051..2678337 (+) 1287 WP_224135324.1 isocitrate lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23545.34 Da        Isoelectric Point: 8.9695

>NTDB_id=549366 J4771_RS12490 WP_262900175.1 2673070..2673687(-) (comF) [Candidatus Kaistella beijingensis strain PM-38]
MECGKIISADELVCELCFDQINFTHHEFGKNNLLKERCKLLFPVENAFALMQFEKESLSRRIVHSLKYGNREKVGKILAN
WTSDRIDLTKDKPDLITTVPLHPKKLKERGYNQLHLFADTLQEKFKVPCNHELLKRNSYKKAQAKKSKKDRTGTENLFCL
KEEISNAQVLIIDDVFTTGNTMSSVAWEILKAGNNKVSVLVMAMD

Nucleotide


Download         Length: 618 bp        

>NTDB_id=549366 J4771_RS12490 WP_262900175.1 2673070..2673687(-) (comF) [Candidatus Kaistella beijingensis strain PM-38]
ATGGAATGTGGAAAAATTATTTCTGCAGATGAATTGGTTTGCGAACTGTGTTTTGACCAAATCAATTTTACTCATCACGA
ATTTGGGAAAAACAACCTGTTGAAAGAAAGATGCAAATTACTTTTTCCGGTTGAAAACGCTTTTGCTTTGATGCAGTTTG
AAAAGGAAAGTTTGAGCCGAAGAATTGTGCACTCCCTGAAATATGGAAACCGTGAAAAAGTGGGAAAAATATTGGCGAAC
TGGACTTCCGATAGAATTGACCTTACAAAAGACAAACCCGATTTAATCACCACTGTTCCACTCCATCCAAAAAAATTGAA
AGAAAGAGGTTACAACCAGCTTCATCTTTTTGCAGACACTTTGCAGGAAAAATTTAAAGTTCCCTGCAACCATGAGCTAT
TAAAACGAAACAGCTATAAAAAAGCACAAGCGAAAAAAAGTAAAAAAGACAGAACAGGTACAGAAAACCTTTTTTGTCTA
AAAGAGGAAATATCGAACGCACAAGTATTGATTATCGACGACGTTTTCACCACAGGAAACACCATGAGCTCCGTTGCGTG
GGAAATTCTAAAAGCCGGAAATAACAAGGTGAGCGTTTTGGTAATGGCAATGGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.22

100

0.512