Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J5V74_RS16885 Genome accession   NZ_CP071947
Coordinates   3647430..3648065 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 2020HL-00861     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3642430..3653065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V74_RS16870 (J5V74_16875) - 3643136..3644380 (+) 1245 WP_023086056.1 lipoprotein-releasing ABC transporter permease subunit -
  J5V74_RS16875 (J5V74_16880) - 3644468..3645001 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  J5V74_RS16880 (J5V74_16885) comA 3645132..3647357 (+) 2226 WP_023104548.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J5V74_RS16885 (J5V74_16890) exbB 3647430..3648065 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J5V74_RS16890 (J5V74_16895) - 3648062..3648502 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  J5V74_RS16895 (J5V74_16900) lpxK 3648502..3649500 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  J5V74_RS16900 (J5V74_16905) - 3649538..3649723 (+) 186 WP_003091157.1 Trm112 family protein -
  J5V74_RS16905 (J5V74_16910) kdsB 3649723..3650487 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J5V74_RS16910 (J5V74_16915) - 3650487..3650951 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  J5V74_RS16915 (J5V74_16920) murB 3650948..3651967 (+) 1020 WP_023104547.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=549322 J5V74_RS16885 WP_003091163.1 3647430..3648065(+) (exbB) [Pseudomonas aeruginosa strain 2020HL-00861]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=549322 J5V74_RS16885 WP_003091163.1 3647430..3648065(+) (exbB) [Pseudomonas aeruginosa strain 2020HL-00861]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81