Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5F39_RS07520 Genome accession   NZ_CP071936
Coordinates   1556405..1556695 (-) Length   96 a.a.
NCBI ID   WP_283491887.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551405..1561695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS07495 - 1552025..1553191 (-) 1167 WP_283491883.1 VirB8/TrbF family protein -
  J5F39_RS07500 - 1553184..1553318 (-) 135 WP_000723782.1 hypothetical protein -
  J5F39_RS07505 - 1553320..1555884 (-) 2565 WP_283491884.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  J5F39_RS07510 - 1555884..1556120 (-) 237 WP_283491885.1 hypothetical protein -
  J5F39_RS07515 comB3 1556132..1556395 (-) 264 WP_283491886.1 competence protein ComB Machinery gene
  J5F39_RS07520 comB2 1556405..1556695 (-) 291 WP_283491887.1 TrbC/VirB2 family protein Machinery gene
  J5F39_RS07525 - 1556692..1557171 (-) 480 WP_283491888.1 hypothetical protein -
  J5F39_RS07530 - 1557168..1557392 (-) 225 WP_000188957.1 hypothetical protein -
  J5F39_RS07535 - 1557395..1558183 (-) 789 WP_283491889.1 integrase -
  J5F39_RS07540 - 1558275..1559345 (+) 1071 WP_283491890.1 transposase -
  J5F39_RS07545 - 1559424..1560404 (+) 981 Protein_1479 hypothetical protein -
  J5F39_RS07550 - 1560409..1561435 (-) 1027 Protein_1480 hypothetical protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10960.25 Da        Isoelectric Point: 11.1589

>NTDB_id=549294 J5F39_RS07520 WP_283491887.1 1556405..1556695(-) (comB2) [Helicobacter pylori strain MTT03]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVFGTLVF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=549294 J5F39_RS07520 WP_283491887.1 1556405..1556695(-) (comB2) [Helicobacter pylori strain MTT03]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTTGGAACGCTGGTGTTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGCAACTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

60.92

90.625

0.552