Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5F39_RS00950 Genome accession   NZ_CP071936
Coordinates   193008..193271 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188008..198271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS00925 groES 188293..188649 (-) 357 WP_000671927.1 co-chaperone GroES -
  J5F39_RS00930 dnaG 188932..190611 (+) 1680 WP_283492006.1 DNA primase -
  J5F39_RS00935 - 190608..191660 (+) 1053 WP_097692071.1 MnmA/TRMU family protein -
  J5F39_RS00940 - 191753..192580 (+) 828 WP_078240978.1 DUF5718 family protein -
  J5F39_RS00945 comB2 192727..193008 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  J5F39_RS00950 comB3 193008..193271 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  J5F39_RS00955 comB4 193273..195636 (+) 2364 WP_283492007.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5F39_RS00965 - 195893..197281 (+) 1389 WP_283492253.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=549276 J5F39_RS00950 WP_000584956.1 193008..193271(+) (comB3) [Helicobacter pylori strain MTT03]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=549276 J5F39_RS00950 WP_000584956.1 193008..193271(+) (comB3) [Helicobacter pylori strain MTT03]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1