Detailed information NTG0548993

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LRO88_RS15085
• Genome accession: NZ_CP089148
• Coordinates: 2735525..2737921 (-)
• Length: 798 a.a.
• NCBI ID: WP_014477509.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NIB353
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2730525..2742921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS15050	glnQ	2731600..2732328 (+)	729	WP_014480419.1	amino acid ABC transporter ATP-binding protein	-
LRO88_RS15055	glnH	2732349..2733170 (+)	822	WP_015251575.1	glutamine ABC transporter substrate-binding protein GlnH	-
LRO88_RS15060	glnM	2733231..2733881 (+)	651	WP_015714433.1	amino acid ABC transporter permease	-
LRO88_RS15065	glnP	2733898..2734554 (+)	657	WP_003229784.1	amino acid ABC transporter permease	-
LRO88_RS15070	yrzQ	2734589..2734720 (-)	132	WP_003229780.1	YrzQ family protein	-
LRO88_RS15075	-	2734742..2734933 (-)	192	WP_003225893.1	hypothetical protein	-
LRO88_RS15080	yrrD	2734945..2735469 (-)	525	WP_082090407.1	PRC-barrel domain-containing protein	-
LRO88_RS15085	recD/recD2/recDB	2735525..2737921 (-)	2397	WP_014477509.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LRO88_RS15090	yrrB	2737946..2738566 (-)	621	WP_206697897.1	tetratricopeptide repeat protein	-
LRO88_RS15095	mnmA	2738652..2739767 (-)	1116	WP_014480424.1	tRNA 2-thiouridine(34) synthase MnmA	-
LRO88_RS15100	iscSA	2739798..2740937 (-)	1140	WP_014480425.1	cysteine desulfurase family protein	-
LRO88_RS15105	cymR	2740956..2741372 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
LRO88_RS15110	rarA	2741575..2742840 (+)	1266	WP_014480427.1	replication-associated recombination protein A	Machinery gene

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 89182.75 Da
• Isoelectric Point: 5.0708

>NTDB_id=548993 LRO88_RS15085 WP_014477509.1 2735525..2737921(-) (recD/recD2/recDB) [Bacillus subtilis strain NIB353]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYENQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ

Nucleotide

• Length: 2397 bp

>NTDB_id=548993 LRO88_RS15085 WP_014477509.1 2735525..2737921(-) (recD/recD2/recDB) [Bacillus subtilis strain NIB353]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAGTTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTATT
CGAGGGGATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAATATTGGCTGATG
CTTCAGTGCTTTATGATGTTCCCAGACTCTCAAAAAAGAAAGCCGACACGCTGGCTGGCGCATTGCAGCGGCATCAGGGA
CTGGAGCAAATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAATCCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCGGATG
AGCTGGGCAGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCTATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAACAGCTGATCATCGACACTCAATCACTGTTAAACCAGTCAGCAAG
GGAAGGGCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCTAGCCAAACC
GAATATGAGAACCAGTTTCCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGAACGGATGAATGTTCAGTATGC
CCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAAA
CGACGGTAATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGATCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGGGACTCCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAAGGCTTTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGATCCCTGATCATATACAAATC
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGTCCGGGACAAGTGCTCAGAGACTTGCTGGCATCCCAGGTGAT
TCCGACTGTGAGACTGACAGACATCTATCGTCAGGCGGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATCAAAGAAGTA
GTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACAGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATTAATGAATTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGTGAGGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTGAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CGTTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-662)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (346-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	99.875	100	0.999