Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J4Q32_RS08800 Genome accession   NZ_CP071916
Coordinates   1719551..1720477 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 19A-19087     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1716442..1719476 1719551..1720477 flank 75


Gene organization within MGE regions


Location: 1716442..1720477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Q32_RS08785 (J4Q32_08790) - 1716442..1717585 (+) 1144 Protein_1758 transposase -
  J4Q32_RS08790 (J4Q32_08795) - 1717752..1719098 (+) 1347 WP_001814919.1 IS1380-like element ISSpn5 family transposase -
  J4Q32_RS08795 (J4Q32_08800) - 1719291..1719476 (+) 186 Protein_1760 transposase -
  J4Q32_RS08800 (J4Q32_08805) amiF 1719551..1720477 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=548959 J4Q32_RS08800 WP_001291293.1 1719551..1720477(-) (amiF) [Streptococcus pneumoniae strain 19A-19087]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=548959 J4Q32_RS08800 WP_001291293.1 1719551..1720477(-) (amiF) [Streptococcus pneumoniae strain 19A-19087]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844