Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   LRO88_RS06680 Genome accession   NZ_CP089148
Coordinates   1267493..1268410 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain NIB353     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262493..1273410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS06665 trpS 1263074..1264066 (-) 993 WP_046160356.1 tryptophan--tRNA ligase -
  LRO88_RS06670 oppA 1264810..1266447 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  LRO88_RS06675 oppB 1266554..1267489 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  LRO88_RS06680 amiD 1267493..1268410 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  LRO88_RS06685 oppD 1268415..1269491 (+) 1077 WP_087614502.1 oligopeptide ABC transporter ATP-binding protein OppD -
  LRO88_RS06690 oppF 1269493..1270410 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  LRO88_RS06695 yjbB 1270517..1271734 (+) 1218 WP_087614503.1 MFS transporter -
  LRO88_RS06700 yjbC 1271898..1272476 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  LRO88_RS06705 spx 1272657..1273052 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=548935 LRO88_RS06680 WP_003232954.1 1267493..1268410(+) (amiD) [Bacillus subtilis strain NIB353]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=548935 LRO88_RS06680 WP_003232954.1 1267493..1268410(+) (amiD) [Bacillus subtilis strain NIB353]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364