Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OSC7112_RS15290 Genome accession   NC_019729
Coordinates   3607880..3608974 (+) Length   364 a.a.
NCBI ID   WP_015176750.1    Uniprot ID   K9VIZ3
Organism   Oscillatoria nigro-viridis PCC 7112     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3602880..3613974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC7112_RS15270 (Osc7112_3074) - 3603815..3604390 (-) 576 WP_015176746.1 Uma2 family endonuclease -
  OSC7112_RS37075 (Osc7112_3075) - 3604847..3605551 (+) 705 WP_015176747.1 type II toxin-antitoxin system HicB family antitoxin -
  OSC7112_RS15280 (Osc7112_3076) - 3605548..3605979 (+) 432 WP_015176748.1 type II toxin-antitoxin system VapC family toxin -
  OSC7112_RS15285 (Osc7112_3077) - 3606190..3607473 (-) 1284 WP_015176749.1 ABC transporter substrate-binding protein -
  OSC7112_RS15290 (Osc7112_3078) pilM 3607880..3608974 (+) 1095 WP_015176750.1 type IV pilus assembly protein PilM Machinery gene
  OSC7112_RS15295 (Osc7112_3079) - 3609388..3610296 (+) 909 WP_015176751.1 PilN domain-containing protein -
  OSC7112_RS15300 (Osc7112_3080) - 3610293..3611093 (+) 801 WP_015176752.1 hypothetical protein -
  OSC7112_RS15305 (Osc7112_3081) - 3611474..3613864 (+) 2391 WP_015176753.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39816.62 Da        Isoelectric Point: 4.1234

>NTDB_id=54867 OSC7112_RS15290 WP_015176750.1 3607880..3608974(+) (pilM) [Oscillatoria nigro-viridis PCC 7112]
MVNFFKGLLSQRQPGIGLEIAPDRINIIQLEKKGQALKLGILASTEVPEDYIQEGQIVDPPGMAELIRTVLAENKIKAKR
VATAIPGREAVIRLIPVPAELNEEELRDYMNAEAGLYLPFPREDADVDYQKIGLFVDDDGVEKVQVVLVATRREVTDTYI
ETFKEAGLVIDVLEVTSFALIRTLKDQLQQFSSQEAAVLTAIEFDSTELAIVVDGIPQFNRTIPIGTYQIQTALNQAMNL
PPTRDTSELQGMTLPVTDTMGASGDANPGTNAMIKVLGELADELRRSVDFYLNQSEELEVAQLLLAGPGAAIGKLDEFFM
QRLSLPASQVDPIETLGLEISQEITPEQRAGLGVALGLGLREVM

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=54867 OSC7112_RS15290 WP_015176750.1 3607880..3608974(+) (pilM) [Oscillatoria nigro-viridis PCC 7112]
ATGGTTAACTTTTTCAAAGGTCTACTTTCCCAACGCCAGCCAGGAATCGGGCTCGAAATAGCCCCAGACCGCATCAACAT
CATTCAGCTCGAAAAGAAAGGTCAGGCATTAAAATTAGGCATCCTAGCCTCAACAGAAGTTCCAGAAGACTACATACAAG
AAGGACAAATAGTCGATCCGCCGGGAATGGCAGAACTAATACGTACCGTCCTCGCCGAGAACAAAATCAAAGCCAAGCGA
GTAGCCACAGCCATTCCCGGCCGCGAAGCCGTCATCCGCCTCATCCCAGTTCCCGCAGAGCTCAACGAAGAAGAACTGCG
GGATTACATGAACGCAGAAGCAGGACTGTACTTGCCATTTCCCAGAGAAGACGCCGACGTAGACTATCAAAAAATAGGCC
TATTTGTAGATGACGACGGAGTAGAAAAAGTGCAAGTCGTGTTAGTAGCAACCCGCAGAGAAGTTACCGACACATACATC
GAAACCTTCAAAGAAGCCGGACTGGTTATAGACGTACTAGAAGTAACCAGCTTTGCCCTAATCCGCACCCTCAAAGACCA
ACTGCAACAATTTTCCTCCCAAGAAGCCGCAGTTCTCACCGCCATAGAATTTGACAGCACCGAGTTAGCTATAGTAGTGG
ACGGCATACCTCAGTTCAACCGTACCATCCCGATCGGCACCTACCAAATCCAGACCGCCCTCAACCAAGCCATGAACCTG
CCGCCAACCAGAGACACCAGCGAACTGCAAGGCATGACCCTGCCAGTCACAGATACAATGGGCGCATCGGGAGACGCCAA
TCCCGGCACAAATGCGATGATCAAAGTCTTGGGAGAACTAGCAGACGAACTGCGCCGCTCAGTAGACTTTTACCTCAACC
AGAGTGAAGAACTCGAAGTAGCGCAACTGCTGCTAGCAGGGCCGGGAGCTGCGATCGGCAAACTAGACGAATTTTTTATG
CAAAGATTAAGCTTGCCCGCATCTCAAGTCGATCCCATCGAAACCCTAGGACTCGAAATCAGCCAAGAAATTACCCCAGA
ACAGCGAGCAGGTTTAGGAGTCGCCCTAGGTTTAGGACTAAGGGAGGTTATGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9VIZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

59.563

100

0.599

Multiple sequence alignment