Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP16_RS02170 Genome accession   NZ_CP089067
Coordinates   419708..420433 (+) Length   241 a.a.
NCBI ID   WP_034030268.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414708..425433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS02140 (LSP16_02090) - 414828..415706 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  LSP16_RS02145 (LSP16_02095) - 415708..417084 (-) 1377 WP_219832733.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LSP16_RS02150 (LSP16_02100) - 417095..417343 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  LSP16_RS02155 (LSP16_02105) - 417420..418178 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  LSP16_RS02160 (LSP16_02110) - 418296..419222 (+) 927 WP_003121790.1 LysR family transcriptional regulator -
  LSP16_RS02165 (LSP16_02115) - 419276..419569 (+) 294 WP_003084806.1 hypothetical protein -
  LSP16_RS02170 (LSP16_02120) comF 419708..420433 (+) 726 WP_034030268.1 ComF family protein Machinery gene
  LSP16_RS02175 (LSP16_02125) - 420475..420795 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  LSP16_RS02180 (LSP16_02130) - 420863..421621 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  LSP16_RS02185 (LSP16_02135) - 421683..422657 (+) 975 WP_003129062.1 serine/threonine protein kinase -
  LSP16_RS02190 (LSP16_02140) rarD 422860..423756 (+) 897 WP_003121788.1 EamA family transporter RarD -
  LSP16_RS02195 (LSP16_02145) - 424446..424961 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27112.59 Da        Isoelectric Point: 10.8076

>NTDB_id=548615 LSP16_RS02170 WP_034030268.1 419708..420433(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=548615 LSP16_RS02170 WP_034030268.1 419708..420433(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCTAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386