Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP20_RS08800 Genome accession   NZ_CP089065
Coordinates   1899740..1900165 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894740..1905165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS08780 (LSP20_08780) ileS 1894897..1897728 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  LSP20_RS08785 (LSP20_08785) lspA 1897721..1898230 (+) 510 WP_003094728.1 signal peptidase II -
  LSP20_RS08790 (LSP20_08790) fkpB 1898223..1898663 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LSP20_RS08795 (LSP20_08795) ispH 1898749..1899693 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LSP20_RS08800 (LSP20_08800) comF 1899740..1900165 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LSP20_RS08805 (LSP20_08805) pilY2 1900162..1900509 (-) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  LSP20_RS08810 (LSP20_08810) pilY1 1900511..1903996 (-) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -
  LSP20_RS08815 (LSP20_08815) pilX 1904008..1904595 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=548548 LSP20_RS08800 WP_003094721.1 1899740..1900165(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=548548 LSP20_RS08800 WP_003094721.1 1899740..1900165(-) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383