Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4N37_RS00605 Genome accession   NZ_CP071855
Coordinates   131646..132368 (-) Length   240 a.a.
NCBI ID   WP_252041447.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126646..137368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS00580 (J4N37_00580) - 127827..128318 (+) 492 WP_252041442.1 type II secretion system protein M -
  J4N37_RS00585 (J4N37_00585) - 128320..129081 (+) 762 WP_252041444.1 type II secretion system protein N -
  J4N37_RS00590 (J4N37_00590) cysQ 129371..130198 (-) 828 WP_045386207.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J4N37_RS00595 (J4N37_00595) nudE 130242..130811 (-) 570 WP_252041446.1 ADP compounds hydrolase NudE -
  J4N37_RS00600 (J4N37_00600) nfuA 130964..131548 (-) 585 WP_010445007.1 Fe-S biogenesis protein NfuA -
  J4N37_RS00605 (J4N37_00605) comF 131646..132368 (-) 723 WP_252041447.1 phosphoribosyltransferase family protein Machinery gene
  J4N37_RS00610 (J4N37_00610) bioH 132448..133218 (+) 771 WP_038883400.1 pimeloyl-ACP methyl ester esterase BioH -
  J4N37_RS00615 (J4N37_00615) - 133346..133810 (+) 465 WP_038883402.1 hypothetical protein -
  J4N37_RS00620 (J4N37_00620) - 133898..136216 (-) 2319 WP_252041448.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27661.95 Da        Isoelectric Point: 8.3685

>NTDB_id=548398 J4N37_RS00605 WP_252041447.1 131646..132368(-) (comF) [Vibrio sp. SCSIO 43153]
MLSHHWQNIMFRLLGSQCALCQFPLESGQPSILRWCSSCTELLQPQPRCLRCGLQLHSTDSEQVLVCGACLADPPPWHKL
YTLGDYSFPLAGEIQRFKDRRELWQVSGLCHQLAEQISDPAPLLTSVPIHWKRYLTRGFNQSAILTRYLAQNLSQAHDTQ
LFSKVRYTRSQRHYRKQLREENLAHAFKLNRIPEQKHIAIVDDVVTTGSTVRQLCQLLLEVGVERIDIYCICRTPVPNTI

Nucleotide


Download         Length: 723 bp        

>NTDB_id=548398 J4N37_RS00605 WP_252041447.1 131646..132368(-) (comF) [Vibrio sp. SCSIO 43153]
ATGTTATCTCATCACTGGCAAAACATCATGTTTCGCCTTCTCGGTAGCCAATGTGCACTTTGCCAGTTCCCGCTCGAAAG
TGGGCAACCTTCCATTCTGCGTTGGTGTTCCAGCTGTACTGAACTACTACAACCTCAGCCAAGGTGTTTGCGCTGCGGAC
TCCAACTTCACTCTACAGATTCAGAGCAGGTATTAGTCTGCGGCGCTTGTTTAGCGGATCCACCACCCTGGCATAAACTC
TACACCTTAGGTGATTACAGCTTCCCACTGGCTGGGGAAATTCAGCGATTTAAAGATCGCCGTGAATTATGGCAAGTGTC
GGGGCTTTGCCATCAACTTGCAGAGCAAATCTCGGACCCTGCCCCACTATTGACAAGCGTCCCCATTCATTGGAAACGCT
ACCTCACCAGGGGCTTCAATCAAAGTGCAATCTTAACGCGCTACCTTGCACAAAACTTATCGCAAGCACACGATACTCAA
CTTTTTAGCAAAGTGCGTTATACCCGCTCTCAACGACACTACCGAAAACAGCTTAGAGAAGAGAATCTCGCTCATGCCTT
TAAGCTAAATCGAATCCCAGAACAAAAACACATCGCCATTGTTGATGATGTGGTTACCACAGGCAGTACGGTCCGACAAT
TATGTCAATTACTACTTGAAGTTGGGGTCGAAAGAATTGATATTTACTGCATCTGCCGAACTCCTGTTCCAAATACGATC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

56.432

100

0.567
  comF Vibrio cholerae strain A1552

49.16

99.167

0.488