Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4N44_RS00630 Genome accession   NZ_CP071852
Coordinates   141916..142641 (-) Length   241 a.a.
NCBI ID   WP_009700712.1    Uniprot ID   A0A454CZW2
Organism   Vibrio sp. SCSIO 43155     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136916..147641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS00605 (J4N44_00605) - 138073..138564 (+) 492 WP_005448492.1 type II secretion system protein M -
  J4N44_RS00610 (J4N44_00610) - 138566..139327 (+) 762 WP_005448490.1 type II secretion system protein N -
  J4N44_RS00615 (J4N44_00615) cysQ 139617..140444 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J4N44_RS00620 (J4N44_00620) nudE 140492..141058 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  J4N44_RS00625 (J4N44_00625) nfuA 141234..141818 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  J4N44_RS00630 (J4N44_00630) comF 141916..142641 (-) 726 WP_009700712.1 ComF family protein Machinery gene
  J4N44_RS00635 (J4N44_00635) bioH 142726..143490 (+) 765 WP_009700713.1 pimeloyl-ACP methyl ester esterase BioH -
  J4N44_RS00640 (J4N44_00640) - 143627..144091 (+) 465 WP_009700714.1 hypothetical protein -
  J4N44_RS00645 (J4N44_00645) - 144195..146516 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27713.80 Da        Isoelectric Point: 8.4332

>NTDB_id=548352 J4N44_RS00630 WP_009700712.1 141916..142641(-) (comF) [Vibrio sp. SCSIO 43155]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=548352 J4N44_RS00630 WP_009700712.1 141916..142641(-) (comF) [Vibrio sp. SCSIO 43155]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCATGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A454CZW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465