Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4N39_RS14160 Genome accession   NZ_CP071848
Coordinates   3014972..3015667 (+) Length   231 a.a.
NCBI ID   WP_252020575.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3009972..3020667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS14140 (J4N39_14155) - 3011611..3012708 (-) 1098 WP_252020571.1 glycosyltransferase family 4 protein -
  J4N39_RS14145 (J4N39_14160) - 3012718..3013425 (-) 708 WP_252020572.1 3-deoxy-D-manno-octulosonic acid kinase -
  J4N39_RS14150 (J4N39_14165) - 3013524..3013982 (-) 459 WP_252020573.1 ATP-dependent Lon protease -
  J4N39_RS14155 (J4N39_14170) bioH 3014145..3014936 (-) 792 WP_252020574.1 pimeloyl-ACP methyl ester esterase BioH -
  J4N39_RS14160 (J4N39_14175) comF 3014972..3015667 (+) 696 WP_252020575.1 phosphoribosyltransferase family protein Machinery gene
  J4N39_RS14165 (J4N39_14180) nfuA 3015751..3016338 (+) 588 WP_252020576.1 Fe-S biogenesis protein NfuA -
  J4N39_RS14170 (J4N39_14185) cysQ 3016533..3017351 (-) 819 WP_252020577.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J4N39_RS14175 (J4N39_14190) nudE 3017361..3017918 (-) 558 WP_252020579.1 ADP compounds hydrolase NudE -
  J4N39_RS14180 (J4N39_14195) - 3018036..3018797 (-) 762 WP_252020581.1 type II secretion system protein N -
  J4N39_RS14185 (J4N39_14200) - 3018798..3019286 (-) 489 WP_252020583.1 type II secretion system protein M -
  J4N39_RS14190 (J4N39_14205) gspL 3019283..3020500 (-) 1218 WP_252020585.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26513.92 Da        Isoelectric Point: 9.1969

>NTDB_id=548305 J4N39_RS14160 WP_252020575.1 3014972..3015667(+) (comF) [Vibrio sp. SCSIO 43136]
MLQSLIHRHITPNCALCGQKLAPNDGASLWCASCLTMLHPAPHCRRCGLPTAVMQPHCGQCLTNPPPWQRIYHLGHYQPP
LSHLIGQMKFHHQFWLANSLAPLLASTIESPAPLLLSVPLHWRRFVQRGYNQSHHLALALEKSLPDSRYQPKLFERCRHT
PYQRKLDRKARLTNLEHAFRLREKPHQKHVAIVDDVVTTGSTVRQLCQLLLDVEVEKIDIYCLSRTPEQPI

Nucleotide


Download         Length: 696 bp        

>NTDB_id=548305 J4N39_RS14160 WP_252020575.1 3014972..3015667(+) (comF) [Vibrio sp. SCSIO 43136]
ATGCTTCAATCATTAATTCACCGCCATATTACCCCGAACTGCGCCCTTTGTGGGCAGAAGCTTGCACCGAATGATGGTGC
GAGCCTGTGGTGCGCAAGTTGTCTCACCATGTTACACCCTGCACCACATTGTCGTCGCTGCGGGCTTCCGACAGCGGTGA
TGCAGCCTCATTGTGGCCAATGCCTTACCAACCCGCCCCCTTGGCAACGTATCTATCACCTAGGTCACTATCAACCACCA
TTGAGTCATTTGATTGGGCAAATGAAATTTCATCATCAGTTTTGGCTGGCAAACAGCTTAGCGCCATTACTGGCAAGCAC
CATTGAATCCCCCGCCCCTCTGCTATTGTCAGTGCCTTTGCACTGGCGACGTTTTGTTCAGCGAGGGTATAACCAAAGCC
ACCACTTAGCGTTGGCATTAGAAAAATCTCTACCAGACAGTCGCTATCAGCCAAAACTGTTTGAACGATGTCGCCATACC
CCTTATCAACGCAAGCTGGACAGAAAAGCTCGCTTAACCAATCTTGAGCATGCGTTTCGATTGCGAGAGAAACCGCATCA
AAAGCATGTTGCGATTGTTGATGATGTGGTCACAACGGGCAGTACCGTACGACAACTTTGCCAATTACTGCTTGATGTTG
AAGTAGAAAAAATTGATATTTACTGCTTGAGCCGCACACCAGAGCAACCGATTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(173-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.511

94.805

0.498
  comF Vibrio campbellii strain DS40M4

47.186

100

0.472