Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4N43_RS14840 Genome accession   NZ_CP071842
Coordinates   3198365..3199090 (+) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3193365..3204090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS14825 (J4N43_14735) - 3194498..3196819 (+) 2322 WP_158159537.1 Tex family protein -
  J4N43_RS14830 (J4N43_14740) - 3196924..3197388 (-) 465 WP_005379316.1 hypothetical protein -
  J4N43_RS14835 (J4N43_14745) bioH 3197513..3198280 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  J4N43_RS14840 (J4N43_14750) comF 3198365..3199090 (+) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  J4N43_RS14845 (J4N43_14755) nfuA 3199188..3199772 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  J4N43_RS14850 (J4N43_14760) nudE 3199949..3200518 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  J4N43_RS14855 (J4N43_14765) cysQ 3200563..3201390 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J4N43_RS14860 (J4N43_14770) - 3201694..3202455 (-) 762 WP_062730773.1 type II secretion system protein N -
  J4N43_RS14865 (J4N43_14775) - 3202457..3202948 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=548222 J4N43_RS14840 WP_033905914.1 3198365..3199090(+) (comF) [Vibrio sp. SCSIO 43009]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=548222 J4N43_RS14840 WP_033905914.1 3198365..3199090(+) (comF) [Vibrio sp. SCSIO 43009]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477