Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4N40_RS15650 Genome accession   NZ_CP071840
Coordinates   3249455..3250180 (+) Length   241 a.a.
NCBI ID   WP_213972343.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43097     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3244455..3255180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS15635 (J4N40_15505) - 3245588..3247909 (+) 2322 WP_250654308.1 Tex family protein -
  J4N40_RS15640 (J4N40_15510) - 3248014..3248478 (-) 465 WP_250654309.1 ATP-dependent Lon protease -
  J4N40_RS15645 (J4N40_15515) bioH 3248603..3249370 (-) 768 WP_181881270.1 pimeloyl-ACP methyl ester esterase BioH -
  J4N40_RS15650 (J4N40_15520) comF 3249455..3250180 (+) 726 WP_213972343.1 phosphoribosyltransferase family protein Machinery gene
  J4N40_RS15655 (J4N40_15525) nfuA 3250278..3250862 (+) 585 WP_250654310.1 Fe-S biogenesis protein NfuA -
  J4N40_RS15660 (J4N40_15530) nudE 3251039..3251608 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  J4N40_RS15665 (J4N40_15535) cysQ 3251653..3252480 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J4N40_RS15670 (J4N40_15540) - 3252773..3253534 (-) 762 WP_062730773.1 type II secretion system protein N -
  J4N40_RS15675 (J4N40_15545) - 3253536..3254027 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27739.89 Da        Isoelectric Point: 9.0280

>NTDB_id=548178 J4N40_RS15650 WP_213972343.1 3249455..3250180(+) (comF) [Vibrio sp. SCSIO 43097]
MLSHHWQNIMHRVLSSQCGLCQFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=548178 J4N40_RS15650 WP_213972343.1 3249455..3250180(+) (comF) [Vibrio sp. SCSIO 43097]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGCGGCCTGTGTCAGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAGCGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.083

99.585

0.469