Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP19_RS07970 Genome accession   NZ_CP089061
Coordinates   1719325..1719750 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1714325..1724750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP19_RS07955 (LSP19_07955) pilX 1714895..1715482 (+) 588 WP_034003335.1 type 4a pilus minor pilin PilX -
  LSP19_RS07960 (LSP19_07960) pilY1 1715494..1718979 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  LSP19_RS07965 (LSP19_07965) pilY2 1718981..1719328 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  LSP19_RS07970 (LSP19_07970) comF 1719325..1719750 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LSP19_RS07975 (LSP19_07975) ispH 1719797..1720741 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LSP19_RS07980 (LSP19_07980) fkpB 1720827..1721267 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LSP19_RS07985 (LSP19_07985) lspA 1721260..1721769 (-) 510 WP_003102615.1 signal peptidase II -
  LSP19_RS07990 (LSP19_07990) ileS 1721762..1724593 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=548130 LSP19_RS07970 WP_003094721.1 1719325..1719750(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF41]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=548130 LSP19_RS07970 WP_003094721.1 1719325..1719750(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF41]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383