Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PSE7367_RS00185 Genome accession   NC_019701
Coordinates   47715..48830 (-) Length   371 a.a.
NCBI ID   WP_015163331.1    Uniprot ID   K9SCM5
Organism   Pseudanabaena sp. PCC 7367     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 42715..53830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS00170 (Pse7367_0034) - 43670..46069 (-) 2400 WP_015163328.1 secretin N-terminal domain-containing protein -
  PSE7367_RS00175 (Pse7367_0035) - 46199..47020 (-) 822 WP_015163329.1 hypothetical protein -
  PSE7367_RS19850 (Pse7367_0036) - 47010..47708 (-) 699 WP_015163330.1 PilN domain-containing protein -
  PSE7367_RS00185 (Pse7367_0037) pilM 47715..48830 (-) 1116 WP_015163331.1 type IV pilus assembly protein PilM Machinery gene
  PSE7367_RS00190 (Pse7367_0038) - 49550..50368 (-) 819 WP_015163332.1 prepilin peptidase -
  PSE7367_RS00195 (Pse7367_0039) - 50905..51150 (+) 246 WP_015163333.1 hypothetical protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40137.81 Da        Isoelectric Point: 4.1978

>NTDB_id=54809 PSE7367_RS00185 WP_015163331.1 47715..48830(-) (pilM) [Pseudanabaena sp. PCC 7367]
MNNFLSLIGGKPPGVGIEVNSERVNIVQLKSKGQAGYKLVNHATSTLDEGIVEEGRINDPIALGEIIRGLMSDNKIKAKK
VATAVPGRETVSRLIKLPAEIPDDELREMVLNQEASLYLPFPREDADVDYQKLGTSLDDDGIERLEILMVATPREVTDMY
LQTMEIAQLDVDIVEVTSFSIIRSLKEQLARFQTMAEAVAIVDIEYESTEITITVDGVPQFSRTVGIGTEQIQNAQLRAI
NLPPRRNTDMEMLSAMTVPIQTIDTAGLAGGSGNSPGDAAILRVLGDLSDELRRSIDFHTSQTAGSDVVQLLLVGPGACI
GQLNEFFSQRLGIAVTQVDPLDALAVSADDDLSVPERMAMVVVLGLGIREA

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=54809 PSE7367_RS00185 WP_015163331.1 47715..48830(-) (pilM) [Pseudanabaena sp. PCC 7367]
ATGAATAATTTCCTTAGTTTAATAGGTGGAAAACCCCCAGGTGTCGGCATAGAAGTAAATTCGGAACGGGTCAATATTGT
TCAACTCAAATCTAAAGGTCAGGCTGGCTATAAATTGGTAAATCACGCCACTTCCACTTTAGATGAGGGAATTGTTGAAG
AAGGGCGGATTAATGATCCGATCGCCCTAGGTGAAATTATTCGCGGCTTGATGTCGGATAACAAAATCAAAGCCAAAAAA
GTTGCTACCGCAGTGCCAGGCAGAGAAACAGTCAGCCGCCTGATTAAATTACCCGCTGAAATTCCCGATGATGAGCTGCG
CGAAATGGTATTGAACCAGGAAGCTAGCTTATATTTGCCCTTCCCCCGCGAGGATGCGGATGTGGATTATCAAAAGCTAG
GTACAAGTCTTGACGACGATGGGATCGAGCGATTAGAAATTTTGATGGTGGCCACGCCGCGTGAAGTCACTGACATGTAT
CTGCAAACCATGGAAATTGCCCAACTTGATGTTGACATCGTTGAGGTGACCAGTTTTTCAATTATTCGCAGCCTCAAAGA
GCAGCTCGCTCGCTTCCAAACTATGGCAGAGGCAGTGGCGATCGTAGACATTGAATATGAGTCCACTGAAATTACGATCA
CCGTTGATGGCGTACCACAATTCTCGCGCACGGTTGGCATTGGTACTGAGCAAATTCAAAATGCCCAACTGCGGGCAATT
AACTTACCACCTCGGCGCAACACTGACATGGAAATGCTCTCAGCCATGACGGTGCCAATCCAGACGATCGATACCGCCGG
GTTGGCAGGTGGTAGTGGCAATAGCCCTGGGGATGCGGCAATTTTGCGAGTGCTGGGCGATCTATCCGATGAACTGCGGC
GATCGATTGATTTCCATACCAGTCAAACCGCTGGATCGGATGTGGTGCAATTGTTATTGGTTGGCCCAGGAGCTTGCATT
GGCCAGCTCAATGAATTTTTCTCACAGCGATTGGGTATTGCCGTCACCCAGGTTGATCCTCTGGATGCACTAGCTGTAAG
TGCAGATGATGATCTGTCAGTACCAGAGCGAATGGCAATGGTTGTAGTTTTGGGACTAGGCATTAGGGAGGCTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SCM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

53.908

100

0.539

Multiple sequence alignment