Detailed information NTG0548083

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: CSB63_RS08510
• Genome accession: NZ_CP089060
• Coordinates: 1614988..1617492 (+)
• Length: 834 a.a.
• NCBI ID: WP_014727703.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CH8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1609988..1622492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB63_RS08490 (CSB63_1787)	-	1612224..1612766 (-)	543	WP_002947866.1	CvpA family protein	-
CSB63_RS08495 (CSB63_1788)	-	1612763..1613080 (-)	318	WP_002947863.1	hypothetical protein	-
CSB63_RS08500 (CSB63_1789)	rnhC	1613394..1614284 (+)	891	WP_011681634.1	ribonuclease HIII	-
CSB63_RS08505 (CSB63_1790)	lepB	1614303..1614926 (+)	624	WP_002947854.1	signal peptidase I	-
CSB63_RS08510 (CSB63_1791)	recD/recD2/recDB	1614988..1617492 (+)	2505	WP_014727703.1	ATP-dependent RecD-like DNA helicase	Machinery gene
CSB63_RS08515 (CSB63_1792)	-	1617548..1617874 (-)	327	WP_011226559.1	AzlD domain-containing protein	-
CSB63_RS08520 (CSB63_1793)	-	1617861..1618559 (-)	699	WP_420910717.1	AzlC family ABC transporter permease	-
CSB63_RS08525 (CSB63_1794)	tsaD	1618605..1619618 (-)	1014	WP_011681638.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
CSB63_RS08530 (CSB63_1795)	rimI	1619618..1620031 (-)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
CSB63_RS08535 (CSB63_1796)	tsaB	1620033..1620719 (-)	687	WP_002947108.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
CSB63_RS08540 (CSB63_1798)	-	1620983..1621213 (+)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94221.66 Da
• Isoelectric Point: 4.5949

>NTDB_id=548083 CSB63_RS08510 WP_014727703.1 1614988..1617492(+) (recD/recD2/recDB) [Streptococcus thermophilus strain CH8]
MQEFYFSGTIERIIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGEVMEGEDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKINYGTEQILSKLSSY
GLTPKAAAQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRITKDQPDISAEDKIQASL
ERVEDELGITYDKVQKEAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQIRQGQLPTDFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKNVKNEGTDAFNQTKTENNRPSETLENKDFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=548083 CSB63_RS08510 WP_014727703.1 1614988..1617492(+) (recD/recD2/recDB) [Streptococcus thermophilus strain CH8]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATGCCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGAAGTCATGGAGGGGG
AAGACTATACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCTGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAAGCCTTCCTTGCAAAATTAAAAATCAACTATGGTACTGAACAAATCTTGTCAAAACTTTCCAGCTAT
GGACTCACACCAAAGGCTGCCGCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATCGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTCACTGTCTGCTAGAAGCTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTAACCAACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAAAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCACGAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGATGAGCTTGGTATCACCTATGACAAAGTTCAAAAAGAGGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCGCCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACTACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATACGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGGTCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATCGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTGCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAATGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAAGGAACAGACGCCTTCAATCAAACAAAAACGGAAAACAATAGACCCTCAGAAACCCTTGAAAACAAAGACT
TCTCGGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAACTGGGCAACTATCGACCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAACAACTAG

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (331-524)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.846	89.568	0.402