Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CHRO_RS16820 Genome accession   NC_019695
Coordinates   3824455..3825579 (-) Length   374 a.a.
NCBI ID   WP_015155435.1    Uniprot ID   K9U234
Organism   Chroococcidiopsis thermalis PCC 7203     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3819455..3830579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHRO_RS16805 (Chro_3428) - 3819912..3822050 (-) 2139 WP_041463221.1 type IV pilus secretin family protein -
  CHRO_RS16810 (Chro_3429) - 3822925..3823674 (-) 750 WP_015155433.1 hypothetical protein -
  CHRO_RS16815 (Chro_3430) - 3823671..3824462 (-) 792 WP_015155434.1 PilN domain-containing protein -
  CHRO_RS16820 (Chro_3431) pilM 3824455..3825579 (-) 1125 WP_015155435.1 type IV pilus assembly protein PilM Machinery gene
  CHRO_RS16825 (Chro_3432) - 3825708..3827030 (+) 1323 WP_015155436.1 sugar ABC transporter substrate-binding protein -
  CHRO_RS16830 (Chro_3433) - 3827064..3828359 (-) 1296 WP_015155437.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CHRO_RS16835 (Chro_3434) - 3828617..3828850 (+) 234 WP_015155438.1 hypothetical protein -
  CHRO_RS16840 (Chro_3435) hrcA 3828980..3830068 (-) 1089 WP_015155439.1 heat-inducible transcriptional repressor HrcA -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41278.15 Da        Isoelectric Point: 4.2747

>NTDB_id=54802 CHRO_RS16820 WP_015155435.1 3824455..3825579(-) (pilM) [Chroococcidiopsis thermalis PCC 7203]
MIDRLKSLLTKRGCGVGIELAPERINIAQLKKQRQGYKLTAFSSTPVPEGLFQDGQIADPPALAELIQKALTDTKIKAQW
VATAVPGRESIVRLIPLPAELNDQELREMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVQVLLVATRKQVTDTY
MDTFQYAGLKVNVIEINSFALIRTIREQLRAYNSNEGVALVDVQFDNTEIAIIVDGVPQFSRTIPIGTYQMQSALLRSMN
LPASRDTQMLESFNLPLTSGDDDDEPEDMPDVDSGTLAVMRVLAELADELRRSIDFYLSQSENLEMVQVLLCGPGGGLGN
LSEFFQQKLNIPTAPIDPVAALSLDVDEEKITPMQRPGLGTAIGLGLRGAWGNV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=54802 CHRO_RS16820 WP_015155435.1 3824455..3825579(-) (pilM) [Chroococcidiopsis thermalis PCC 7203]
GTGATTGACCGTCTCAAAAGTTTACTGACAAAGCGTGGATGTGGAGTTGGCATTGAACTAGCTCCTGAACGAATTAATAT
AGCTCAACTGAAAAAGCAGCGACAGGGTTACAAACTGACAGCTTTTTCCTCCACCCCGGTTCCAGAAGGGCTGTTTCAAG
ATGGTCAAATTGCTGACCCTCCAGCCCTGGCAGAATTAATTCAAAAGGCACTAACTGACACTAAAATCAAAGCCCAATGG
GTAGCGACAGCCGTGCCTGGGCGAGAGTCAATCGTGCGGCTAATTCCCTTGCCAGCAGAGCTAAATGACCAAGAACTAAG
GGAAATGGTACTGAATCATGAAGCTGGTTTGTACTTACCCTACCCGCGCGAAGAAGCTGATGTTGACTATCAAAAGCTAG
GCTACTTCGTCGATGAAGATGGAATTGAGAAGGTACAAGTATTGCTGGTGGCGACTCGCAAGCAAGTTACAGACACCTAT
ATGGATACCTTCCAATATGCAGGGTTAAAAGTTAATGTCATAGAAATTAACAGTTTTGCTTTAATTCGCACGATTCGGGA
GCAATTACGGGCATATAACTCGAATGAAGGCGTAGCGCTGGTCGATGTTCAATTTGATAATACAGAAATTGCCATTATTG
TTGATGGAGTGCCGCAATTTTCCCGTACTATTCCGATTGGGACGTATCAAATGCAGAGCGCTCTCCTGCGATCGATGAAT
TTACCTGCATCTAGGGATACTCAAATGTTGGAGTCATTCAATCTACCACTGACTAGTGGAGATGATGATGACGAACCAGA
AGATATGCCAGATGTAGATTCTGGCACTTTGGCAGTGATGCGGGTTTTAGCCGAATTAGCAGACGAATTGCGTCGCTCGA
TTGATTTTTACCTCAGTCAAAGTGAGAATTTGGAAATGGTACAGGTTCTTTTGTGCGGACCTGGCGGTGGTTTGGGCAAC
TTGAGTGAATTTTTCCAACAAAAGTTAAACATTCCCACAGCGCCAATCGATCCAGTAGCAGCACTGTCTTTAGATGTAGA
CGAGGAGAAAATTACTCCAATGCAAAGACCGGGATTGGGAACGGCGATCGGTTTAGGACTCAGAGGTGCATGGGGCAATG
TATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9U234

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

60.811

98.93

0.602

Multiple sequence alignment