Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW53_RS18350 Genome accession   NZ_CP071808
Coordinates   3594848..3595627 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS014     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589848..3600627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS18325 (EXW53_18380) uppS 3590610..3591386 (-) 777 WP_002111371.1 isoprenyl transferase -
  EXW53_RS18330 (EXW53_18385) frr 3591472..3592029 (-) 558 WP_000531506.1 ribosome recycling factor -
  EXW53_RS18335 (EXW53_18390) pyrH 3592033..3592755 (-) 723 WP_002111372.1 UMP kinase -
  EXW53_RS18340 (EXW53_18395) tsf 3592822..3593709 (-) 888 WP_002088177.1 translation elongation factor Ts -
  EXW53_RS18345 (EXW53_18400) rpsB 3593792..3594493 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  EXW53_RS18350 (EXW53_18405) codY 3594848..3595627 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW53_RS18355 (EXW53_18410) hslU 3595705..3597096 (-) 1392 WP_002111373.1 ATP-dependent protease ATPase subunit HslU -
  EXW53_RS18360 (EXW53_18415) hslV 3597119..3597661 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW53_RS18365 (EXW53_18420) xerC 3597704..3598603 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  EXW53_RS18370 (EXW53_18425) trmFO 3598675..3599979 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=548016 EXW53_RS18350 WP_002014541.1 3594848..3595627(-) (codY) [Bacillus mycoides strain JAS014]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=548016 EXW53_RS18350 WP_002014541.1 3594848..3595627(-) (codY) [Bacillus mycoides strain JAS014]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCAAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAGAACGAACGTATGAAACACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGCTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456