Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JZ789_RS04790 Genome accession   NZ_CP071806
Coordinates   922261..923100 (-) Length   279 a.a.
NCBI ID   WP_043032876.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 917261..928100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS04775 (JZ789_04725) uidA 917621..919420 (-) 1800 WP_023369913.1 beta-glucuronidase -
  JZ789_RS04780 (JZ789_04730) - 919436..920464 (-) 1029 WP_023369911.1 sugar kinase -
  JZ789_RS04785 (JZ789_04735) - 920521..922074 (-) 1554 WP_024388440.1 MFS transporter -
  JZ789_RS04790 (JZ789_04740) endA 922261..923100 (-) 840 WP_043032876.1 DNA/RNA non-specific endonuclease Machinery gene
  JZ789_RS04795 (JZ789_04745) - 923130..923321 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  JZ789_RS04800 (JZ789_04750) murA 923314..924597 (-) 1284 WP_170244737.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JZ789_RS04805 (JZ789_04755) - 924621..924845 (-) 225 WP_012775178.1 DUF1146 family protein -
  JZ789_RS04810 (JZ789_04760) - 924905..925321 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  JZ789_RS04815 (JZ789_04765) atpD 925331..926737 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  JZ789_RS04820 (JZ789_04770) - 926757..927635 (-) 879 WP_105148358.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30147.34 Da        Isoelectric Point: 6.2370

>NTDB_id=547949 JZ789_RS04790 WP_043032876.1 922261..923100(-) (endA) [Streptococcus suis strain GX69]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=547949 JZ789_RS04790 WP_043032876.1 922261..923100(-) (endA) [Streptococcus suis strain GX69]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591