Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J3497_RS02025 Genome accession   NZ_CP071805
Coordinates   441102..442943 (-) Length   613 a.a.
NCBI ID   WP_253611561.1    Uniprot ID   -
Organism   Bifidobacterium pseudolongum strain NjM1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 436102..447943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3497_RS01995 - 437016..437444 (+) 429 WP_129893125.1 hypothetical protein -
  J3497_RS02000 - 437485..437664 (-) 180 WP_253611315.1 hypothetical protein -
  J3497_RS02005 - 437684..438904 (-) 1221 WP_253611316.1 hypothetical protein -
  J3497_RS02010 - 438868..439548 (-) 681 WP_165364541.1 response regulator transcription factor -
  J3497_RS02015 - 439801..440145 (+) 345 WP_129853213.1 hypothetical protein -
  J3497_RS02020 - 440235..441035 (+) 801 WP_253611317.1 hypothetical protein -
  J3497_RS02025 rcrQ 441102..442943 (-) 1842 WP_253611561.1 ABC transporter ATP-binding protein Regulator
  J3497_RS02030 - 443004..444923 (-) 1920 WP_253611318.1 ABC transporter ATP-binding protein -
  J3497_RS02035 - 444949..445524 (-) 576 WP_253611562.1 MarR family transcriptional regulator -
  J3497_RS02040 - 445691..447208 (-) 1518 WP_253611319.1 amino acid permease -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67557.91 Da        Isoelectric Point: 4.9226

>NTDB_id=547923 J3497_RS02025 WP_253611561.1 441102..442943(-) (rcrQ) [Bifidobacterium pseudolongum strain NjM1]
MGPHGPRGGAPTEKADDLGGALKDLMRFSRRYIPAIIVALVLGVVGTVCQIIGPDYLGDMTDEITKGLPAMINGKPVLEA
IDMAAITRIGWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRSAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDAVGQT
LGQSLGSLITSVTLFFGALIMMFANNWLLALCAIAASLLGMVLMLVVMRFSQRYFVKQQAALGDVNGHVEEMYSGHTVVK
AFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLAMSGRIEFGVIVAFMLYIRFFTQPL
SQFAQAFQNLQRCAAGAERVFTFLNEPELADESSKQPLLGMGDDGEITPVEGRVSFEHVRFGYDDDRMIIHDFSADVQPG
QKVAIVGPTGAGKTTMVNLLMRFYEINGGKISIDGIDTKDVPRWNVHDQFSMVLQDTWVFQGTVRENIVYAKEGVSDEQV
IAACKAVGLHRYIMSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEEMIQTAMDKLTEGRT
SFVIAHRLSTIRDADMILVMKDGDIVERGTHDELLARGGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=547923 J3497_RS02025 WP_253611561.1 441102..442943(-) (rcrQ) [Bifidobacterium pseudolongum strain NjM1]
ATGGGGCCGCATGGCCCGCGCGGTGGTGCGCCCACCGAAAAAGCGGATGATCTGGGCGGCGCGCTCAAGGACCTGATGCG
GTTCAGCCGCCGGTATATCCCGGCGATCATCGTCGCGCTCGTGCTGGGCGTGGTGGGCACGGTCTGCCAGATTATCGGCC
CGGATTATCTGGGTGACATGACCGACGAGATCACCAAGGGTCTGCCCGCGATGATCAACGGCAAGCCGGTGCTCGAAGCC
ATCGACATGGCTGCCATCACGCGCATCGGCTGGACGCTCGTGGCGCTGTATGTGGCGTACGCGCTGTGCTCGTACGTGCA
GAGCTGGATGATGGCGACCGTCACGCAGCGCACGGCGCAACGCCTGCGCTCGGCGATCGACGTGAAGATGAACAAACTGC
CGCTCAAATACTTCGACGAGCACAGCAATGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCCGTGGGGCAGACG
CTCGGGCAGTCGCTCGGCTCACTGATCACCTCGGTCACGCTGTTCTTCGGCGCACTGATCATGATGTTCGCGAACAACTG
GCTGCTCGCGTTGTGCGCGATCGCGGCGAGCCTGCTGGGCATGGTGCTCATGCTCGTCGTCATGCGCTTCTCGCAGCGGT
ACTTCGTCAAGCAGCAGGCCGCGCTCGGCGACGTCAACGGTCACGTCGAGGAGATGTACAGTGGGCACACGGTCGTCAAG
GCGTTCGGCGGCGAGGCGGACGCGATCCGCCGGTTCGAGCGCTACAACAACGACCTGTACGAGTCGGGGTGGAAGAGCCA
GTTCCTTTCCGGCCTGATGATGCCGATGATGAACCTCGTCGGTAATCTCGGGTATGTCGTCGTGTGTGTCGTCGGCGCGT
GGCTCGCGATGAGCGGGCGCATCGAATTCGGCGTCATCGTGGCGTTCATGTTGTACATCCGCTTCTTCACGCAGCCGCTT
TCGCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGGCGCCGAGCGCGTGTTCACGTTCCTCAACGAACC
GGAGCTCGCCGACGAATCGTCTAAGCAGCCACTGCTCGGCATGGGCGATGACGGCGAGATCACGCCGGTCGAGGGGCGTG
TGAGTTTCGAGCACGTCAGGTTCGGGTACGACGACGACCGCATGATCATCCATGATTTCTCCGCGGACGTGCAGCCGGGG
CAGAAGGTCGCGATCGTCGGGCCGACGGGCGCGGGCAAGACGACGATGGTCAACCTACTGATGCGGTTCTACGAGATCAA
CGGCGGCAAGATCTCGATTGACGGCATCGACACGAAGGACGTGCCGCGCTGGAACGTGCATGACCAGTTCTCGATGGTGC
TGCAGGACACCTGGGTGTTCCAAGGCACCGTGCGCGAGAACATCGTGTATGCGAAGGAAGGCGTGAGCGACGAGCAGGTC
ATCGCGGCGTGCAAGGCCGTGGGATTGCACCGCTACATCATGTCGCTGCCCAACGGGTATGACACCGTGCTCGACGAGTC
GGCCACGCTGTCGCAAGGCCAGAAGCAGCTGCTGACGATCGCGCGCGCGATGGTGCAGGATTCGCCGATTCTGATCCTCG
ACGAGGCGACGAGTTCGGTCGATACGCGCACCGAGGAAATGATCCAGACGGCGATGGACAAGCTCACCGAAGGGCGCACG
AGTTTCGTCATCGCGCACCGCCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGAAGGACGGCGACATCGTGGA
ACGCGGCACGCACGACGAGCTGCTCGCGCGCGGCGGTTTCTACGCTGACATCTACAACGCGCAGTTCTCCTTGGCGCAGT
AG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.195

93.475

0.525