Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   LRX86_RS06330 Genome accession   NZ_CP088895
Coordinates   1323776..1325533 (+) Length   585 a.a.
NCBI ID   WP_001020925.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318776..1330533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS06310 (LRX86_06305) - 1319677..1320546 (+) 870 WP_000117592.1 PhzF family phenazine biosynthesis protein -
  LRX86_RS06315 (LRX86_06310) - 1320601..1321380 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  LRX86_RS06320 (LRX86_06315) tsaA 1321485..1322213 (+) 729 WP_004746622.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  LRX86_RS06325 (LRX86_06320) - 1322220..1323488 (-) 1269 WP_218264701.1 DUF4010 domain-containing protein -
  LRX86_RS06330 (LRX86_06325) pilB 1323776..1325533 (+) 1758 WP_001020925.1 GspE/PulE family protein Machinery gene
  LRX86_RS06335 (LRX86_06330) - 1325615..1325974 (+) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  LRX86_RS06340 (LRX86_06335) - 1326082..1326744 (+) 663 WP_001221456.1 response regulator transcription factor -
  LRX86_RS06345 (LRX86_06340) - 1326741..1328099 (+) 1359 WP_001257353.1 ATP-binding protein -
  LRX86_RS06350 (LRX86_06345) hemP 1328165..1328335 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  LRX86_RS06355 (LRX86_06350) - 1328472..1329371 (+) 900 WP_001125735.1 thiamine phosphate synthase -
  LRX86_RS06360 (LRX86_06355) - 1329393..1329944 (-) 552 WP_000913440.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66894.67 Da        Isoelectric Point: 7.0124

>NTDB_id=547632 LRX86_RS06330 WP_001020925.1 1323776..1325533(+) (pilB) [Acinetobacter baumannii strain DETAB-R21]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRTQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDVAHDRDNKSVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=547632 LRX86_RS06330 WP_001020925.1 1323776..1325533(+) (pilB) [Acinetobacter baumannii strain DETAB-R21]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGACGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAGAAAGACGTAGCTCATGACCGTGATAACAAAAGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGCCAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTGCGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCACTTGGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTGGCACAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.437

100

0.379