NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	J4G45_RS08655	Genome accession	NZ_CP071770
Coordinates	1605061..1605684 (-)	Length	207 a.a.
NCBI ID	WP_131261480.1	Uniprot ID	-
Organism	Acinetobacter towneri strain GX5
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1600061..1610684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4G45_RS08625 (J4G45_08630)	-	1600362..1600793 (-)	432	WP_019836521.1	SRPBCC family protein	-
J4G45_RS08630 (J4G45_08635)	tadA	1600859..1601386 (-)	528	WP_168460259.1	tRNA adenosine(34) deaminase TadA	-
J4G45_RS08635 (J4G45_08640)	-	1601416..1602537 (-)	1122	WP_179995296.1	enoyl-CoA hydratase/isomerase family protein	-
J4G45_RS08640 (J4G45_08645)	ung	1602534..1603247 (-)	714	WP_004976786.1	uracil-DNA glycosylase	-
J4G45_RS08645 (J4G45_08650)	-	1603285..1603881 (-)	597	WP_104851897.1	6-pyruvoyl trahydropterin synthase family protein	-
J4G45_RS08650 (J4G45_08655)	gspK	1604064..1605047 (-)	984	WP_171501107.1	type II secretion system minor pseudopilin GspK	-
J4G45_RS08655 (J4G45_08660)	xcpW	1605061..1605684 (-)	624	WP_131261480.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J4G45_RS08660 (J4G45_08665)	xcpV	1605681..1606061 (-)	381	WP_004976793.1	type II secretion system minor pseudopilin GspI	Machinery gene
J4G45_RS08665 (J4G45_08670)	-	1606051..1606602 (-)	552	WP_131261481.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J4G45_RS08670 (J4G45_08675)	-	1606609..1607223 (-)	615	WP_004976797.1	TetR/AcrR family transcriptional regulator	-
J4G45_RS08675 (J4G45_08680)	-	1607317..1608090 (-)	774	WP_004976800.1	TatD family hydrolase	-
J4G45_RS08680 (J4G45_08685)	-	1608115..1608456 (-)	342	WP_026438361.1	PilZ domain-containing protein	-
J4G45_RS08685 (J4G45_08690)	-	1608467..1609456 (-)	990	WP_154320798.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
J4G45_RS08690 (J4G45_08695)	kdsB	1609471..1610232 (-)	762	WP_004976805.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 207 a.a. Molecular weight: 23877.25 Da Isoelectric Point: 6.2606

                                >NTDB_id=547632 J4G45_RS08655 WP_131261480.1 1605061..1605684(-) (xcpW) [Acinetobacter towneri strain GX5]

MSTKKGFTLVELLVAIAIFAVLSALGWKVFDYLAKVKDRNAMHEANLEQLQESYQQILRDTMQAVPLTANVKGQQQPALV

LQNGRFNFSKTGVTDPLQQSISPHERVEYQYRADEKKLYRLKYRNLHQTGNDQPESSVMLDEVEAFEIMVLNPNELSSWP

ESSVDSQQTEQLRLLPKGIKINLTVRDVQYEWIFSLLQTDFLKKKDN

Nucleotide

Download Length: 624 bp

                                >NTDB_id=547632 J4G45_RS08655 WP_131261480.1 1605061..1605684(-) (xcpW) [Acinetobacter towneri strain GX5]

ATGAGTACAAAGAAAGGCTTCACTTTAGTTGAGTTGCTAGTCGCTATTGCAATTTTTGCAGTGCTGTCTGCTTTGGGTTG

GAAAGTATTTGATTATCTCGCCAAAGTCAAAGATCGCAATGCGATGCATGAAGCCAATCTAGAACAGTTGCAAGAAAGCT

ATCAACAAATATTACGTGACACGATGCAGGCTGTTCCATTAACGGCCAATGTCAAAGGGCAGCAACAACCTGCTTTGGTT

TTACAAAATGGACGTTTTAATTTCAGTAAAACAGGGGTGACCGATCCTTTGCAGCAGAGTATTTCACCCCATGAGCGTGT

TGAATATCAATATCGTGCCGATGAAAAAAAATTGTATCGTTTAAAATATCGTAATTTGCATCAAACGGGCAATGATCAGC

CTGAGTCGAGCGTGATGTTGGATGAAGTCGAAGCCTTTGAGATTATGGTTTTGAATCCAAATGAATTGAGCAGTTGGCCT

GAAAGCAGTGTCGATTCGCAGCAAACTGAACAATTAAGGCTACTCCCGAAAGGAATAAAAATAAATTTAACCGTGCGTGA

CGTGCAATACGAATGGATATTTAGCTTATTGCAGACTGATTTTTTAAAGAAGAAAGACAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	60.199	97.101	0.585

Detailed information NTG0547632