Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4G44_RS01315 Genome accession   NZ_CP071766
Coordinates   269033..269458 (-) Length   141 a.a.
NCBI ID   WP_180158755.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264033..274458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G44_RS01285 (J4G44_01285) - 264526..265506 (+) 981 WP_104852622.1 esterase/lipase family protein -
  J4G44_RS01290 (J4G44_01290) - 265683..266651 (+) 969 WP_180186856.1 lipase family alpha/beta hydrolase -
  J4G44_RS01295 (J4G44_01295) rplS 266720..267091 (-) 372 WP_004974529.1 50S ribosomal protein L19 -
  J4G44_RS01300 (J4G44_01300) trmD 267273..268013 (-) 741 WP_207973768.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J4G44_RS01305 (J4G44_01305) rimM 268056..268604 (-) 549 WP_004974527.1 ribosome maturation factor RimM -
  J4G44_RS01310 (J4G44_01310) rpsP 268633..268890 (-) 258 WP_004974526.1 30S ribosomal protein S16 -
  J4G44_RS01315 (J4G44_01315) comF 269033..269458 (-) 426 WP_180158755.1 type IV pilin protein Machinery gene
  J4G44_RS01320 (J4G44_01320) comE 269452..269940 (-) 489 WP_180043538.1 type IV pilin protein Machinery gene
  J4G44_RS01325 (J4G44_01325) - 269964..274046 (-) 4083 WP_207973769.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15162.45 Da        Isoelectric Point: 9.8167

>NTDB_id=547575 J4G44_RS01315 WP_180158755.1 269033..269458(-) (comF) [Acinetobacter towneri strain GX3]
MVKKSGFTLIELLIVVAIIGILASIAYPSYQDYLIKAKRVEAQSELLVIAQNLAKYKATNGNFSNADLSRVYGANVLPKD
GAAMYDLVLTVTNSNWILSASPKNGTRQQGNGSIVINSMGQKCWTKGSTCTPSATSNWDGK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=547575 J4G44_RS01315 WP_180158755.1 269033..269458(-) (comF) [Acinetobacter towneri strain GX3]
ATGGTAAAAAAATCGGGATTTACATTAATTGAACTTCTTATCGTAGTTGCCATTATTGGAATTCTAGCCTCCATTGCATA
TCCATCTTATCAAGACTATTTAATTAAAGCGAAACGTGTAGAAGCTCAATCAGAGTTGTTGGTTATTGCGCAAAATTTAG
CTAAATATAAAGCTACAAACGGTAACTTTAGTAATGCTGATTTATCAAGGGTTTATGGTGCAAATGTATTACCGAAAGAT
GGTGCAGCAATGTATGATTTGGTATTAACGGTTACAAATAGTAATTGGATTTTATCAGCTAGCCCTAAAAATGGTACTCG
TCAACAGGGTAATGGAAGTATTGTGATTAATAGTATGGGGCAAAAATGTTGGACTAAAGGAAGTACTTGCACACCATCCG
CAACTTCCAACTGGGACGGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

49.306

100

0.504
  pilE Acinetobacter baumannii D1279779

51.449

97.872

0.504