Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LQK05_RS08440 Genome accession   NZ_CP088157
Coordinates   1715781..1717055 (+) Length   424 a.a.
NCBI ID   WP_000102735.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710781..1722055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQK05_RS08410 (LQK05_08410) mnmA 1710983..1712101 (-) 1119 WP_000066105.1 tRNA 2-thiouridine(34) synthase MnmA -
  LQK05_RS08415 (LQK05_08415) - 1712102..1713244 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  LQK05_RS08420 (LQK05_08420) - 1713556..1714569 (+) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  LQK05_RS08425 (LQK05_08425) - 1714806..1714952 (-) 147 WP_000009238.1 SAS049 family protein -
  LQK05_RS08430 (LQK05_08430) - 1714992..1715174 (-) 183 WP_000752909.1 CsbD family protein -
  LQK05_RS08435 (LQK05_08435) - 1715274..1715696 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  LQK05_RS08440 (LQK05_08440) rarA 1715781..1717055 (+) 1275 WP_000102735.1 replication-associated recombination protein A Machinery gene
  LQK05_RS08445 (LQK05_08445) - 1717216..1717989 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  LQK05_RS08450 (LQK05_08450) - 1717989..1718117 (-) 129 WP_001808039.1 hypothetical protein -
  LQK05_RS08460 (LQK05_08460) aspS 1718450..1720216 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  LQK05_RS08465 (LQK05_08465) hisS 1720232..1721494 (-) 1263 WP_000590824.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47250.81 Da        Isoelectric Point: 8.3539

>NTDB_id=547401 LQK05_RS08440 WP_000102735.1 1715781..1717055(+) (rarA) [Staphylococcus aureus strain 199]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=547401 LQK05_RS08440 WP_000102735.1 1715781..1717055(+) (rarA) [Staphylococcus aureus strain 199]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684