Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J3S98_RS03805 Genome accession   NZ_CP071729
Coordinates   771326..772264 (+) Length   312 a.a.
NCBI ID   WP_021165031.1    Uniprot ID   A0AAD1NII7
Organism   Lactococcus cremoris strain FM-YL11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 766326..777264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS03785 (J3S98_03785) - 767177..767365 (+) 189 Protein_724 hypothetical protein -
  J3S98_RS03790 (J3S98_03790) - 767426..768537 (+) 1112 WP_116368894.1 IS3-like element IS981 family transposase -
  J3S98_RS03795 (J3S98_03795) typA 769054..770886 (+) 1833 WP_031286284.1 translational GTPase TypA -
  J3S98_RS03800 (J3S98_03800) - 770987..771238 (+) 252 WP_011677086.1 DUF3165 family protein -
  J3S98_RS03805 (J3S98_03805) comYH 771326..772264 (+) 939 WP_021165031.1 class I SAM-dependent methyltransferase Machinery gene
  J3S98_RS03810 (J3S98_03810) - 772456..773643 (+) 1188 WP_011677084.1 acetate kinase -
  J3S98_RS03815 (J3S98_03815) - 773802..774989 (+) 1188 WP_014573258.1 acetate kinase -
  J3S98_RS03820 (J3S98_03820) - 775119..775571 (+) 453 WP_021165032.1 hypothetical protein -
  J3S98_RS03825 (J3S98_03825) pyrH 775656..776372 (+) 717 WP_004254608.1 UMP kinase -
  J3S98_RS03830 (J3S98_03830) frr 776528..777085 (+) 558 WP_011677081.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34710.68 Da        Isoelectric Point: 4.3603

>NTDB_id=547292 J3S98_RS03805 WP_021165031.1 771326..772264(+) (comYH) [Lactococcus cremoris strain FM-YL11]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVSKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=547292 J3S98_RS03805 WP_021165031.1 771326..772264(+) (comYH) [Lactococcus cremoris strain FM-YL11]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTTCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487