Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J3S98_RS01515 Genome accession   NZ_CP071729
Coordinates   316351..317139 (-) Length   262 a.a.
NCBI ID   WP_011834262.1    Uniprot ID   A0A0M2ZTB8
Organism   Lactococcus cremoris strain FM-YL11     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 311351..322139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS01500 (J3S98_01500) gatB 312850..314283 (-) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  J3S98_RS01505 (J3S98_01505) gatA 314308..315768 (-) 1461 WP_014571887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  J3S98_RS01510 (J3S98_01510) gatC 315768..316073 (-) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  J3S98_RS01515 (J3S98_01515) codY 316351..317139 (-) 789 WP_011834262.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J3S98_RS01520 (J3S98_01520) - 317292..318506 (-) 1215 WP_021166020.1 pyridoxal phosphate-dependent aminotransferase -
  J3S98_RS01525 (J3S98_01525) - 318636..320216 (-) 1581 WP_021166019.1 hypothetical protein -
  J3S98_RS01530 (J3S98_01530) - 320414..320653 (-) 240 WP_011675217.1 hypothetical protein -
  J3S98_RS01535 (J3S98_01535) - 320665..320874 (-) 210 WP_014571884.1 hypothetical protein -
  J3S98_RS01540 (J3S98_01540) - 321052..321828 (-) 777 Protein_304 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29158.48 Da        Isoelectric Point: 4.5254

>NTDB_id=547276 J3S98_RS01515 WP_011834262.1 316351..317139(-) (codY) [Lactococcus cremoris strain FM-YL11]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=547276 J3S98_RS01515 WP_011834262.1 316351..317139(-) (codY) [Lactococcus cremoris strain FM-YL11]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACGGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZTB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462