Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J0X00_RS11000 Genome accession   NZ_CP071708
Coordinates   1047805..1048506 (+) Length   233 a.a.
NCBI ID   WP_136485439.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042805..1053506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS10980 (J0X00_10980) - 1043242..1043904 (+) 663 WP_282478051.1 hypothetical protein -
  J0X00_RS10985 (J0X00_10985) - 1043960..1046266 (+) 2307 WP_282478052.1 Tex family protein -
  J0X00_RS10990 (J0X00_10990) - 1046347..1046817 (-) 471 WP_282478053.1 ATP-dependent Lon protease -
  J0X00_RS10995 (J0X00_10995) bioH 1046947..1047717 (-) 771 WP_136485517.1 pimeloyl-ACP methyl ester esterase BioH -
  J0X00_RS11000 (J0X00_11000) comF 1047805..1048506 (+) 702 WP_136485439.1 phosphoribosyltransferase family protein Machinery gene
  J0X00_RS11005 (J0X00_11005) nfuA 1048605..1049192 (+) 588 WP_136485441.1 Fe-S biogenesis protein NfuA -
  J0X00_RS11010 (J0X00_11010) nudE 1049338..1049886 (+) 549 WP_136485443.1 ADP compounds hydrolase NudE -
  J0X00_RS11015 (J0X00_11015) cysQ 1049910..1050737 (+) 828 WP_136485445.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J0X00_RS11020 (J0X00_11020) - 1050822..1051580 (-) 759 WP_282478054.1 type II secretion system protein N -
  J0X00_RS11025 (J0X00_11025) - 1051580..1052074 (-) 495 WP_282478055.1 type II secretion system protein M -
  J0X00_RS11030 (J0X00_11030) gspL 1052084..1053295 (-) 1212 WP_136485451.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26485.00 Da        Isoelectric Point: 9.4416

>NTDB_id=547144 J0X00_RS11000 WP_136485439.1 1047805..1048506(+) (comF) [Vibrio sp. ABG19]
MLANQLQKTMLSWLAPACPLCRLPLAKQDTHGLCAACLEWYTPQPRCERCGLPSPMPVTQCGECLRSPPPWQRLICLGDY
RFPLSQAVHKLKYQRQFWQAPSLAGLLATRITDPAPLLTSVPLHWRRYWLRGFNQSDLLARALSQALQCHYQPQLLQRVR
ATAMQQGLNKRERTRNLTQAFRLSEPPASRHIAIVDDVVTTGSTMRQLCNLLLDVGVKRLDIYCICRTPEPGS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=547144 J0X00_RS11000 WP_136485439.1 1047805..1048506(+) (comF) [Vibrio sp. ABG19]
ATGTTAGCGAATCAGCTTCAAAAAACCATGCTTTCCTGGCTGGCTCCGGCCTGCCCGCTGTGCCGCCTGCCGCTGGCCAA
GCAGGATACGCACGGCTTATGCGCCGCCTGCCTCGAGTGGTATACGCCGCAACCGCGATGCGAGCGCTGCGGACTGCCAA
GCCCGATGCCGGTCACACAATGCGGTGAATGCCTGCGCTCGCCACCGCCCTGGCAACGCCTGATTTGTCTCGGGGATTAC
CGTTTTCCACTCAGTCAGGCGGTGCATAAACTCAAGTATCAGCGTCAGTTCTGGCAGGCACCGTCACTGGCCGGTTTACT
GGCAACACGCATCACGGATCCGGCTCCGCTTCTCACTTCAGTGCCCCTGCACTGGCGCCGTTACTGGCTGCGTGGTTTCA
ATCAGAGTGATCTGCTGGCGCGGGCGCTGAGTCAAGCACTGCAGTGTCATTACCAGCCGCAGCTGTTGCAACGGGTACGC
GCCACCGCCATGCAGCAGGGACTGAATAAACGCGAACGCACCCGTAACCTGACTCAGGCATTCCGCCTCAGTGAACCACC
AGCCAGTCGCCATATTGCTATCGTCGACGATGTGGTCACCACGGGCAGTACCATGCGGCAATTATGCAATTTACTGCTTG
ATGTGGGGGTCAAAAGGCTTGATATTTACTGTATATGCCGTACTCCTGAGCCGGGAAGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.069

99.142

0.635
  comF Vibrio campbellii strain DS40M4

49.583

100

0.511