Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LQT99_RS07585 Genome accession   NZ_CP088005
Coordinates   1494384..1494833 (+) Length   149 a.a.
NCBI ID   WP_032874811.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489384..1499833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS07545 (LQT99_07535) ctaE 1489513..1490136 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  LQT99_RS07550 (LQT99_07540) ctaF 1490139..1490471 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  LQT99_RS07555 (LQT99_07545) ctaG 1490496..1491380 (+) 885 WP_087920763.1 cytochrome c oxidase assembly factor CtaG -
  LQT99_RS07560 (LQT99_07550) - 1491415..1491774 (-) 360 WP_007409688.1 YugN family protein -
  LQT99_RS07565 (LQT99_07555) - 1491915..1492358 (+) 444 WP_014417702.1 CBS domain-containing protein -
  LQT99_RS07570 (LQT99_07560) - 1492443..1493483 (+) 1041 WP_032874809.1 CAP domain-containing protein -
  LQT99_RS07575 (LQT99_07565) - 1493648..1494058 (+) 411 WP_025284691.1 YlbD family protein -
  LQT99_RS07580 (LQT99_07570) - 1494074..1494313 (+) 240 WP_003154475.1 YlbE-like family protein -
  LQT99_RS07585 (LQT99_07575) ylbF 1494384..1494833 (+) 450 WP_032874811.1 YlbF family regulator Regulator
  LQT99_RS07590 (LQT99_07580) - 1494892..1495164 (+) 273 WP_014417705.1 YlbG family protein -
  LQT99_RS07595 (LQT99_07585) rsmD 1495463..1496017 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LQT99_RS07600 (LQT99_07590) coaD 1496022..1496504 (+) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  LQT99_RS07605 (LQT99_07595) ylbJ 1496523..1497749 (-) 1227 WP_032874813.1 sporulation integral membrane protein YlbJ -
  LQT99_RS07610 (LQT99_07600) - 1497929..1498708 (+) 780 WP_014304961.1 patatin family protein -
  LQT99_RS07615 (LQT99_07605) sepM 1498714..1499736 (+) 1023 WP_007611255.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16846.97 Da        Isoelectric Point: 4.9483

>NTDB_id=547121 LQT99_RS07585 WP_032874811.1 1494384..1494833(+) (ylbF) [Bacillus amyloliquefaciens strain bm]
MYATIESVKLQREAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=547121 LQT99_RS07585 WP_032874811.1 1494384..1494833(+) (ylbF) [Bacillus amyloliquefaciens strain bm]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGGGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.248

100

0.872