Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   J1N58_RS07145 Genome accession   NZ_CP071697
Coordinates   1520958..1521794 (-) Length   278 a.a.
NCBI ID   WP_105148778.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1515958..1526794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS07130 (J1N58_07130) uidA 1516311..1518110 (-) 1800 WP_105182334.1 beta-glucuronidase -
  J1N58_RS07135 (J1N58_07135) - 1518126..1519154 (-) 1029 WP_105148776.1 sugar kinase -
  J1N58_RS07140 (J1N58_07140) - 1519211..1520764 (-) 1554 WP_207560220.1 MFS transporter -
  J1N58_RS07145 (J1N58_07145) endA 1520958..1521794 (-) 837 WP_105148778.1 DNA/RNA non-specific endonuclease Machinery gene
  J1N58_RS07150 (J1N58_07150) - 1521824..1522015 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  J1N58_RS07155 (J1N58_07155) murA 1522008..1523291 (-) 1284 WP_105131083.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  J1N58_RS07160 (J1N58_07160) - 1523315..1523539 (-) 225 WP_012775178.1 DUF1146 family protein -
  J1N58_RS07165 (J1N58_07165) - 1523599..1524015 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  J1N58_RS07170 (J1N58_07170) atpD 1524025..1525431 (-) 1407 WP_044683208.1 F0F1 ATP synthase subunit beta -
  J1N58_RS07175 (J1N58_07175) - 1525451..1526329 (-) 879 WP_099871598.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30118.39 Da        Isoelectric Point: 6.7653

>NTDB_id=547049 J1N58_RS07145 WP_105148778.1 1520958..1521794(-) (endA) [Streptococcus suis strain 1112S]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNLADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIHLN

Nucleotide


Download         Length: 837 bp        

>NTDB_id=547049 J1N58_RS07145 WP_105148778.1 1520958..1521794(-) (endA) [Streptococcus suis strain 1112S]
ATGGCGAAGAAAAATGTAAGAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACCTTGCTGACTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAAAGTCAAGTAC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGTGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGTCATCTAGAAGCAAAAGCAGCTGACGGTAGCTTAGAGTTTAATGTCTTTGTACCCAATGTTCAGAGCGGATTGAG
TATTAACTACCATAGTGGGGAAATCCATCTTAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

75

83.453

0.626
  endA Streptococcus pneumoniae D39

75

83.453

0.626
  endA Streptococcus pneumoniae R6

75

83.453

0.626
  endA Streptococcus pneumoniae TIGR4

75

83.453

0.626