Detailed information NTG0547017

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: XYFPCFBP8416_RS03825
• Genome accession: NZ_CP087993
• Coordinates: 867925..869292 (+)
• Length: 455 a.a.
• NCBI ID: WP_004083742.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8416
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 862925..874292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XYFPCFBP8416_RS03815 (XYFPCFBP8416_003790)	-	864687..866597 (+)	1911	WP_154437122.1	DUF3857 domain-containing transglutaminase family protein	-
XYFPCFBP8416_RS03820 (XYFPCFBP8416_003795)	lolA	867160..867786 (+)	627	WP_049756311.1	outer membrane lipoprotein chaperone LolA	-
XYFPCFBP8416_RS03825 (XYFPCFBP8416_003800)	rarA	867925..869292 (+)	1368	WP_004083742.1	replication-associated recombination protein A	Machinery gene
XYFPCFBP8416_RS03830 (XYFPCFBP8416_003805)	crcB	869453..869854 (+)	402	WP_004083741.1	fluoride efflux transporter CrcB	-
XYFPCFBP8416_RS03835 (XYFPCFBP8416_003810)	-	870530..872026 (+)	1497	WP_154437124.1	ATP-binding protein	-
XYFPCFBP8416_RS03840 (XYFPCFBP8416_003815)	folK	872152..872667 (+)	516	WP_031345731.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
XYFPCFBP8416_RS03845 (XYFPCFBP8416_003820)	-	872678..873415 (-)	738	WP_004083738.1	pteridine reductase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50836.08 Da
• Isoelectric Point: 6.5799

>NTDB_id=547017 XYFPCFBP8416_RS03825 WP_004083742.1 867925..869292(+) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8416]
MTRQRFPTLQHDLLGVVPLLQPLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADL
LSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALE
AWDIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAE
NGVALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1368 bp

>NTDB_id=547017 XYFPCFBP8416_RS03825 WP_004083742.1 867925..869292(+) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8416]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGTTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGCTT
CCGGGAATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGGCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACTTG
CTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCA
CAAGAGTGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCT
ACTTGGCCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAG
GCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTAC
AGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGC
TACATCTGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAG
AACGGTGTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGTCT
GGAGATTAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCCGC
GTGCATAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (273-438)

• AAA C-terminal domain (AAA_assoc_2) (194-271)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.771	92.967	0.36