Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SYN6312_RS06825 Genome accession   NC_019680
Coordinates   1384445..1385524 (+) Length   359 a.a.
NCBI ID   WP_015124129.1    Uniprot ID   K9RRK7
Organism   Synechococcus sp. PCC 6312     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379445..1390524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN6312_RS06805 (Syn6312_1410) - 1379627..1381141 (+) 1515 WP_015124125.1 hypothetical protein -
  SYN6312_RS06810 (Syn6312_1411) - 1381197..1382009 (+) 813 WP_041430678.1 hypothetical protein -
  SYN6312_RS06815 (Syn6312_1412) - 1382069..1382818 (-) 750 WP_015124127.1 DUF6515 family protein -
  SYN6312_RS06820 (Syn6312_1413) - 1383146..1383883 (+) 738 WP_015124128.1 hypothetical protein -
  SYN6312_RS06825 (Syn6312_1414) pilM 1384445..1385524 (+) 1080 WP_015124129.1 type IV pilus assembly protein PilM Machinery gene
  SYN6312_RS06830 (Syn6312_1415) - 1385543..1386322 (+) 780 WP_015124130.1 PilN domain-containing protein -
  SYN6312_RS06835 (Syn6312_1416) - 1386319..1387047 (+) 729 WP_015124131.1 hypothetical protein -
  SYN6312_RS06840 (Syn6312_1417) - 1387158..1389332 (+) 2175 WP_015124132.1 AMIN domain-containing protein -
  SYN6312_RS06845 (Syn6312_1418) folP 1389446..1390231 (-) 786 WP_156804964.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38734.68 Da        Isoelectric Point: 4.3239

>NTDB_id=54690 SYN6312_RS06825 WP_015124129.1 1384445..1385524(+) (pilM) [Synechococcus sp. PCC 6312]
MIASLFTKPKQGLGIELTPERVNIALLEQGRQGIKLSSFVSVPLNEGAIEEGRIMDTATVAEAIRQGLEEKKIKAKNAIS
AIPMGDAVIRLIRLPAELSNAELREMVLYQEAPLYLPFPREEADVDYQKLGSSLDDDGIERVEVLLVGTLRSVTDTIAST
FIQAGVQLTTLEVSSFALMRTMREQLQQLVGEAVAIVDIGYDGTEISIVKDGIPQFNRKVPIGTARMQEAISRAMNLPPA
MGVDLLSSLSVPVGQIDGVPANPSSAAILRVLGDLSDEIRRSIDFYLNQGETLEISQLLLAGVGAGIGQIDDFFNEKLNY
VTLLMDPIANLSLQVSDELSPDKRPGLGTVIGLGLRGVL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=54690 SYN6312_RS06825 WP_015124129.1 1384445..1385524(+) (pilM) [Synechococcus sp. PCC 6312]
GTGATTGCTAGTTTATTTACCAAACCAAAACAAGGCCTGGGCATAGAACTTACCCCGGAGCGAGTCAATATCGCCCTTTT
AGAGCAGGGACGGCAGGGAATTAAGTTAAGTTCCTTTGTCTCTGTTCCCCTCAACGAAGGTGCCATCGAAGAAGGGCGGA
TCATGGACACAGCCACCGTGGCAGAAGCCATTCGTCAAGGTCTCGAAGAAAAGAAGATCAAGGCCAAAAATGCTATCAGT
GCTATTCCTATGGGAGATGCGGTGATTCGCTTGATTCGCCTCCCTGCGGAATTGAGTAATGCCGAGCTTCGGGAAATGGT
GCTGTACCAAGAAGCTCCCCTTTATCTGCCCTTTCCCCGAGAAGAAGCTGATGTTGATTATCAGAAGTTGGGTAGCAGCC
TGGATGATGATGGGATTGAGCGGGTGGAAGTTTTGCTGGTGGGGACGTTGCGCTCTGTCACTGATACCATCGCCAGTACG
TTTATCCAGGCCGGTGTGCAACTGACAACGTTAGAAGTGTCTAGCTTTGCCCTGATGCGGACGATGCGAGAACAACTCCA
GCAATTAGTTGGGGAAGCCGTGGCGATTGTGGATATTGGCTACGACGGTACAGAAATTAGCATTGTTAAGGATGGGATTC
CCCAATTTAATCGTAAAGTCCCCATTGGCACAGCCCGGATGCAAGAGGCTATTAGTCGAGCCATGAATTTACCGCCAGCA
ATGGGTGTGGATCTGCTTAGTAGTTTATCGGTTCCCGTGGGACAAATAGATGGTGTTCCAGCTAACCCAAGTTCGGCGGC
AATCTTACGAGTGTTGGGGGATTTATCCGATGAAATCCGCCGTTCGATTGATTTCTACTTAAATCAAGGTGAAACATTAG
AAATTTCGCAACTTCTTTTGGCGGGAGTTGGGGCAGGAATTGGTCAAATTGATGACTTTTTTAATGAAAAGTTGAACTAT
GTCACCCTCCTCATGGATCCGATTGCCAACCTCTCACTCCAGGTGAGTGATGAACTTTCCCCAGATAAACGCCCAGGCCT
GGGAACAGTCATTGGTCTGGGTTTGCGCGGCGTACTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9RRK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.97

100

0.513

Multiple sequence alignment