Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   J3Q14_RS07060 Genome accession   NZ_CP071587
Coordinates   1395898..1396506 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain RM1477     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390898..1401506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q14_RS07035 (J3Q14_07035) - 1391055..1391819 (+) 765 WP_002890500.1 TIGR02757 family protein -
  J3Q14_RS07040 (J3Q14_07040) - 1391823..1392587 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q14_RS07045 (J3Q14_07045) ctsF 1392580..1393761 (-) 1182 WP_002855848.1 type II secretion system F family protein Machinery gene
  J3Q14_RS07050 (J3Q14_07050) ctsE 1393758..1395317 (-) 1560 WP_199398762.1 GspE/PulE family protein Machinery gene
  J3Q14_RS07055 (J3Q14_07055) ctsX 1395307..1395894 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3Q14_RS07060 (J3Q14_07060) ctsP 1395898..1396506 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3Q14_RS07065 (J3Q14_07065) ctsD 1396499..1397911 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q14_RS07070 (J3Q14_07070) ctsR 1397889..1398200 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=546708 J3Q14_RS07060 WP_002851464.1 1395898..1396506(-) (ctsP) [Campylobacter jejuni strain RM1477]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=546708 J3Q14_RS07060 WP_002851464.1 1395898..1396506(-) (ctsP) [Campylobacter jejuni strain RM1477]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATTAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995