Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   J3Q14_RS06420 Genome accession   NZ_CP071587
Coordinates   1263440..1263955 (-) Length   171 a.a.
NCBI ID   WP_002855725.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1477     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258440..1268955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q14_RS06405 (J3Q14_06405) - 1258541..1260268 (-) 1728 WP_002856431.1 flagellin A -
  J3Q14_RS06410 (J3Q14_06410) - 1260351..1262177 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  J3Q14_RS06415 (J3Q14_06415) - 1262189..1263439 (-) 1251 WP_032581674.1 DUF2920 family protein -
  J3Q14_RS06420 (J3Q14_06420) ctsG 1263440..1263955 (-) 516 WP_002855725.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J3Q14_RS06425 (J3Q14_06425) tsaD 1263956..1264963 (-) 1008 WP_002855919.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  J3Q14_RS06430 (J3Q14_06430) - 1264960..1266354 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  J3Q14_RS06435 (J3Q14_06435) dxr 1266356..1267426 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  J3Q14_RS06440 (J3Q14_06440) cdsA 1267423..1268148 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  J3Q14_RS06445 (J3Q14_06445) - 1268157..1268495 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18659.50 Da        Isoelectric Point: 7.8499

>NTDB_id=546701 J3Q14_RS06420 WP_002855725.1 1263440..1263955(-) (ctsG) [Campylobacter jejuni strain RM1477]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSPSSNKACVILSKNENFKNL
ASKTYLLTGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=546701 J3Q14_RS06420 WP_002855725.1 1263440..1263955(-) (ctsG) [Campylobacter jejuni strain RM1477]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGTGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACGAGCCCTTCTAGCAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAACAGGAGGAAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.941

99.415

0.924