Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   J3Q12_RS06350 Genome accession   NZ_CP071582
Coordinates   1254363..1254878 (-) Length   171 a.a.
NCBI ID   WP_002907516.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB28     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249363..1259878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS06335 (J3Q12_06335) - 1249464..1251191 (-) 1728 WP_002856431.1 flagellin A -
  J3Q12_RS06340 (J3Q12_06340) - 1251274..1253100 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  J3Q12_RS06345 (J3Q12_06345) - 1253112..1254363 (-) 1252 Protein_1244 DUF2920 family protein -
  J3Q12_RS06350 (J3Q12_06350) ctsG 1254363..1254878 (-) 516 WP_002907516.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J3Q12_RS06355 (J3Q12_06355) tsaD 1254879..1255886 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  J3Q12_RS06360 (J3Q12_06360) - 1255883..1257277 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  J3Q12_RS06365 (J3Q12_06365) dxr 1257279..1258349 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  J3Q12_RS06370 (J3Q12_06370) cdsA 1258346..1259071 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  J3Q12_RS06375 (J3Q12_06375) - 1259080..1259418 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.52 Da        Isoelectric Point: 6.4693

>NTDB_id=546564 J3Q12_RS06350 WP_002907516.1 1254363..1254878(-) (ctsG) [Campylobacter jejuni strain GB28]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=546564 J3Q12_RS06350 WP_002907516.1 1254363..1254878(-) (ctsG) [Campylobacter jejuni strain GB28]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936